Wall clock time and date at job start Mon Mar 30 2020 02:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00076 * 2 1 4 4 H 1.48503 * 109.47099 * 239.99649 * 3 2 1 5 5 H 1.48498 * 109.46856 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46969 * 119.99685 * 3 2 1 7 7 C 1.37880 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00123 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46896 * 59.99718 * 9 7 2 11 11 O 1.42897 * 109.46860 * 299.99927 * 9 7 2 12 12 C 1.52999 * 109.46956 * 179.97438 * 9 7 2 13 13 H 1.08998 * 109.47301 * 56.91713 * 12 9 7 14 14 C 1.53007 * 109.46874 * 176.91850 * 12 9 7 15 15 C 1.53000 * 109.46995 * 120.00155 * 14 12 9 16 16 C 1.53006 * 109.46893 * 299.99987 * 15 14 12 17 17 C 1.52994 * 109.47315 * 59.99959 * 16 15 14 18 18 C 1.53001 * 109.47336 * 0.02562 * 17 16 15 19 19 C 1.52998 * 109.47176 * 59.99251 * 18 17 16 20 20 C 1.52994 * 109.47599 * 300.00588 * 19 18 17 21 21 H 0.97003 * 120.00162 * 0.02562 * 1 2 3 22 22 H 0.96700 * 114.00236 * 300.00019 * 11 9 7 23 23 H 1.09002 * 109.46652 * 359.97438 * 14 12 9 24 24 H 1.09002 * 109.46718 * 240.00141 * 14 12 9 25 25 H 1.08999 * 109.47078 * 180.02562 * 15 14 12 26 26 H 1.08994 * 109.46977 * 180.02562 * 16 15 14 27 27 H 1.09002 * 109.46783 * 300.00322 * 16 15 14 28 28 H 1.09005 * 109.46949 * 120.00238 * 17 16 15 29 29 H 1.08993 * 109.47451 * 240.00037 * 17 16 15 30 30 H 1.08994 * 109.47325 * 180.02562 * 18 17 16 31 31 H 1.08998 * 109.47116 * 180.02562 * 19 18 17 32 32 H 1.09005 * 109.46656 * 60.00383 * 19 18 17 33 33 H 1.09005 * 109.47392 * 240.00423 * 20 19 18 34 34 H 1.08994 * 109.47766 * 119.99518 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 8 0.4290 -2.5746 1.1670 12 6 2.2453 -3.6621 0.0005 13 1 2.9077 -3.5737 0.8616 14 6 1.4818 -4.9858 0.0781 15 6 1.8007 -5.8315 -1.1564 16 6 1.3798 -5.0730 -2.4168 17 6 2.1431 -3.7494 -2.4943 18 6 3.0735 -3.6256 -1.2860 19 6 4.0676 -4.7886 -1.2865 20 6 3.3043 -6.1122 -1.2090 21 1 -0.4850 0.8401 -0.0004 22 1 0.9208 -2.5291 1.9984 23 1 0.4109 -4.7859 0.1154 24 1 1.7817 -5.5261 0.9760 25 1 1.2565 -6.7743 -1.1014 26 1 1.6065 -5.6757 -3.2962 27 1 0.3089 -4.8732 -2.3799 28 1 2.7328 -3.7232 -3.4107 29 1 1.4349 -2.9209 -2.4943 30 1 3.6170 -2.6824 -1.3410 31 1 4.7301 -4.7006 -0.4255 32 1 4.6570 -4.7622 -2.2031 33 1 3.6044 -6.6527 -0.3112 34 1 3.5310 -6.7146 -2.0886 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691533465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:27 Heat of formation + Delta-G solvation = -101.925522 kcal Electronic energy + Delta-G solvation = -14971.322273 eV Core-core repulsion = 12673.608253 eV Total energy + Delta-G solvation = -2297.714021 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.37851 -37.32628 -34.24385 -32.51870 -31.76328 -31.59129 -28.27517 -24.70784 -23.34130 -22.85092 -21.74416 -18.97322 -17.35530 -17.13707 -16.89094 -16.67176 -16.42612 -15.46106 -14.62203 -14.28826 -13.59660 -13.35103 -13.02158 -12.85088 -12.83199 -12.81683 -12.77493 -12.72690 -12.46362 -12.33954 -11.93128 -11.50822 -11.10114 -10.74775 -10.68706 -10.49554 -10.36771 -9.86927 -8.09144 -6.32480 1.38660 1.39851 1.47737 2.40014 3.15893 3.77905 3.80894 3.90488 4.29624 4.51652 4.53139 4.56782 4.58196 4.60625 4.62658 4.66946 4.75752 4.83247 4.91777 5.17092 5.19440 5.25222 5.40400 5.44479 5.53556 5.56624 5.60902 5.67464 5.68850 5.80209 5.97310 6.19771 6.79230 7.37986 7.60573 8.94868 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.043532 B = 0.010491 C = 0.009737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.053258 B = 2668.219313 C = 2875.030154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 0.951 3.049 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.572 4.572 8 H 0.057 0.943 9 C 0.234 3.766 10 H 0.024 0.976 11 O -0.585 6.585 12 C -0.096 4.096 13 H 0.049 0.951 14 C -0.102 4.102 15 C -0.083 4.083 16 C -0.108 4.108 17 C -0.112 4.112 18 C -0.071 4.071 19 C -0.109 4.109 20 C -0.104 4.104 21 H 0.258 0.742 22 H 0.352 0.648 23 H 0.040 0.960 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.992 -10.645 -3.050 13.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.609 4.609 8 H 0.075 0.925 9 C 0.177 3.823 10 H 0.041 0.959 11 O -0.389 6.389 12 C -0.115 4.115 13 H 0.067 0.933 14 C -0.140 4.140 15 C -0.102 4.102 16 C -0.146 4.146 17 C -0.150 4.150 18 C -0.089 4.089 19 C -0.147 4.147 20 C -0.141 4.141 21 H 0.067 0.933 22 H 0.197 0.803 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.356 -10.591 -3.517 12.843 hybrid contribution 0.411 1.507 0.510 1.644 sum 6.767 -9.083 -3.007 11.719 Atomic orbital electron populations 1.70215 1.07592 1.27050 1.49315 1.25879 0.95397 1.02679 0.93883 0.85746 0.78474 0.79133 0.79041 1.19411 1.21221 1.19317 1.22056 0.93273 0.92809 1.52806 0.92531 1.19397 0.87804 0.90987 0.84153 0.95852 1.86496 1.39598 1.96459 1.16313 1.21660 0.97064 0.95443 0.97345 0.93264 1.21520 0.99192 0.95288 0.98006 1.21060 0.97170 0.97911 0.94034 1.21509 0.98696 0.96007 0.98380 1.21483 0.98269 0.97377 0.97848 1.20851 0.95871 0.98052 0.94151 1.21547 0.97007 0.94336 1.01794 1.21510 0.93556 0.96633 1.02435 0.93275 0.80321 0.94097 0.92028 0.90216 0.90197 0.94015 0.91427 0.94821 0.93114 0.92307 0.91161 0.91404 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.38 12.84 21.45 0.28 -55.11 16 2 C 0.02 1.32 5.40 84.66 0.46 1.77 16 3 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.57 -31.70 8.04 25.60 0.21 -31.49 16 8 H 0.06 3.05 6.92 -2.91 -0.02 3.03 16 9 C 0.23 12.08 1.94 29.85 0.06 12.14 16 10 H 0.02 1.38 6.27 -2.39 -0.01 1.37 16 11 O -0.58 -31.35 11.94 -148.98 -1.78 -33.13 16 12 C -0.10 -3.92 1.94 -10.78 -0.02 -3.94 16 13 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 14 C -0.10 -3.62 5.11 30.60 0.16 -3.47 16 15 C -0.08 -2.38 3.20 -10.78 -0.03 -2.41 16 16 C -0.11 -3.32 5.71 30.59 0.17 -3.14 16 17 C -0.11 -4.01 5.36 30.59 0.16 -3.84 16 18 C -0.07 -2.58 2.51 -10.78 -0.03 -2.61 16 19 C -0.11 -3.03 5.71 30.59 0.17 -2.86 16 20 C -0.10 -2.51 5.71 30.61 0.17 -2.33 16 21 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 22 H 0.35 16.80 9.04 -74.06 -0.67 16.13 16 23 H 0.04 1.66 7.20 -2.39 -0.02 1.64 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.03 1.46 6.36 -2.39 -0.02 1.44 16 30 H 0.05 2.08 6.82 -2.39 -0.02 2.06 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -64.19 258.60 2.41 -61.78 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.40 Total: 22.34 kcal Atomic # 6 Polarization: -43.66 SS G_CDS: 1.48 Total: -42.18 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.28 Total: -55.11 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.78 Total: -33.13 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -64.19 2.41 -61.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691533465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.143 kcal (2) G-P(sol) polarization free energy of solvation -64.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds