Wall clock time and date at job start Mon Mar 30 2020 02:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47084 * 2 1 4 4 C 1.53002 * 109.47404 * 239.99913 * 2 1 3 5 5 C 1.50693 * 109.47003 * 64.99878 * 4 2 1 6 6 H 1.08005 * 120.00471 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00058 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99795 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00320 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47218 * 59.99357 * 9 7 5 11 11 H 1.48494 * 109.47301 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46666 * 299.99849 * 9 7 5 13 13 N 1.46502 * 109.46937 * 120.00027 * 2 1 3 14 14 C 1.35036 * 126.39969 * 60.02540 * 13 2 1 15 15 N 1.30502 * 108.70245 * 179.97438 * 14 13 2 16 16 C 1.34129 * 109.25388 * 359.97438 * 15 14 13 17 17 C 1.50699 * 125.98663 * 180.02562 * 16 15 14 18 18 O 1.42903 * 109.47152 * 180.02562 * 17 16 15 19 19 C 1.34662 * 108.02321 * 0.26968 * 16 15 14 20 20 H 1.09001 * 109.47151 * 300.00330 * 1 2 3 21 21 H 1.09007 * 109.47352 * 59.99849 * 1 2 3 22 22 H 1.08993 * 109.47632 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47260 * 185.00376 * 4 2 1 24 24 H 1.09001 * 109.46602 * 305.00071 * 4 2 1 25 25 H 0.96998 * 119.99988 * 179.97438 * 8 7 5 26 26 H 1.08004 * 125.65141 * 359.94168 * 14 13 2 27 27 H 1.08997 * 109.47198 * 60.02804 * 17 16 15 28 28 H 1.09008 * 109.47393 * 300.02521 * 17 16 15 29 29 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 30 30 H 1.08003 * 126.59552 * 179.69807 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0806 0.9745 -2.3757 7 6 1.9924 -0.4023 -3.7282 8 7 2.6756 -1.5193 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 2.0918 1.9228 -5.1871 11 1 1.9938 -0.1373 -6.4621 12 1 0.0189 0.6703 -5.3090 13 7 2.0182 -0.6906 1.1962 14 6 1.7733 -1.9743 1.5365 15 7 2.3750 -2.2299 2.6659 16 6 3.0195 -1.1298 3.0826 17 6 3.8363 -1.0061 4.3430 18 8 4.3638 0.3185 4.4406 19 6 2.8043 -0.1539 2.1800 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1262 -0.7995 -1.2055 24 1 1.6053 -1.7198 -1.2951 25 1 2.9223 -1.8427 -4.7317 26 1 1.1777 -2.6735 0.9683 27 1 4.6570 -1.7228 4.3159 28 1 3.2041 -1.2100 5.2072 29 1 4.9019 0.4704 5.2296 30 1 3.1809 0.8574 2.2231 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695808258.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:55 Heat of formation + Delta-G solvation = -3.193460 kcal Electronic energy + Delta-G solvation = -13563.889197 eV Core-core repulsion = 11166.916177 eV Total energy + Delta-G solvation = -2396.973020 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.56882 -36.78637 -35.50558 -32.71819 -30.35254 -29.64158 -27.20793 -25.56550 -23.86252 -21.88541 -20.05554 -19.14240 -17.01723 -16.82522 -15.92337 -15.18979 -14.65276 -14.25253 -13.94267 -13.47731 -13.23663 -13.15234 -12.42682 -12.14521 -11.80716 -11.35170 -11.07806 -11.01260 -10.65970 -10.37889 -10.21723 -9.85847 -9.53717 -9.33511 -8.80343 -8.52668 -7.82903 -6.16663 -4.22083 2.66054 3.23927 3.29268 3.30191 3.49113 3.53004 4.16764 4.33403 5.19078 5.25056 5.37651 5.43194 5.56779 5.68490 5.71992 5.74072 5.94249 6.25801 6.27852 6.51986 6.63741 6.92825 7.16541 7.38902 7.47642 7.63499 7.73730 7.88043 8.15147 8.57192 8.82262 9.43089 10.94425 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.053412 B = 0.006591 C = 0.006542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.105798 B = 4247.019599 C = 4279.322531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.126 3.874 3 H 0.089 0.911 4 C 0.021 3.979 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.440 5.440 14 C 0.191 3.809 15 N -0.503 5.503 16 C -0.032 4.032 17 C 0.172 3.828 18 O -0.572 6.572 19 C -0.028 4.028 20 H 0.041 0.959 21 H 0.085 0.915 22 H 0.057 0.943 23 H 0.023 0.977 24 H 0.026 0.974 25 H 0.264 0.736 26 H 0.200 0.800 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.381 0.619 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 2.683 11.392 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.025 3.975 3 H 0.107 0.893 4 C -0.017 4.017 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.527 5.527 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.119 5.119 14 C -0.092 4.092 15 N -0.223 5.223 16 C -0.161 4.161 17 C 0.094 3.906 18 O -0.376 6.376 19 C -0.163 4.163 20 H 0.060 0.940 21 H 0.104 0.896 22 H 0.076 0.924 23 H 0.042 0.958 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.217 0.783 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.227 0.773 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.838 1.966 10.949 11.156 hybrid contribution 0.118 1.091 -0.922 1.433 sum -0.720 3.058 10.027 10.508 Atomic orbital electron populations 1.22037 0.94003 1.02458 1.01911 1.21986 0.94980 0.97139 0.83419 0.89332 1.19438 0.97111 0.96033 0.89093 1.20969 1.36375 1.08755 0.90407 0.92177 1.25003 0.94815 0.95024 0.99267 1.69955 1.37825 1.20877 1.24057 0.86576 0.78955 0.80024 0.82004 1.20117 1.21156 1.20058 1.46078 1.36319 1.11139 1.18382 1.24675 1.03617 0.86109 0.94794 1.69974 1.13422 1.27293 1.11637 1.20106 1.05710 0.91361 0.98923 1.19803 0.94622 0.83188 0.93009 1.86410 1.71522 1.31037 1.48667 1.22365 1.01750 1.00869 0.91355 0.93955 0.89624 0.92437 0.95833 0.95591 0.92604 0.78297 0.92747 0.92872 0.77278 0.81289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.05 37.15 0.34 -2.20 16 2 C 0.13 2.48 3.00 -67.93 -0.20 2.28 16 3 H 0.09 1.71 8.08 -51.93 -0.42 1.29 16 4 C 0.02 0.51 4.45 -27.89 -0.12 0.38 16 5 C -0.53 -13.79 8.41 -34.44 -0.29 -14.08 16 6 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 9 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 13 N -0.44 -8.46 2.62 -111.46 -0.29 -8.75 16 14 C 0.19 3.64 11.65 -90.38 -1.05 2.59 16 15 N -0.50 -9.81 11.25 -10.88 -0.12 -9.94 16 16 C -0.03 -0.58 7.07 -82.86 -0.59 -1.17 16 17 C 0.17 2.38 7.67 36.01 0.28 2.66 16 18 O -0.57 -7.13 12.95 -35.23 -0.46 -7.58 16 19 C -0.03 -0.51 10.86 -16.56 -0.18 -0.69 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.08 1.52 6.95 -51.93 -0.36 1.15 16 22 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 23 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.20 3.36 8.06 -52.48 -0.42 2.94 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.38 2.57 9.12 45.56 0.42 2.98 16 30 H 0.17 2.87 7.86 -52.48 -0.41 2.46 16 LS Contribution 262.60 15.07 3.96 3.96 Total: -1.00 -31.21 262.60 -6.35 -37.55 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -3.23 Total: 2.79 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.92 Total: -8.65 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.32 Total: -43.72 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.46 Total: -7.58 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.21 -6.35 -37.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808258.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.361 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds