Wall clock time and date at job start Mon Mar 30 2020 02:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99677 * 2 1 3 5 5 C 1.50702 * 109.47522 * 185.00185 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46895 * 109.47206 * 239.99530 * 2 1 3 14 14 C 1.46900 * 111.00012 * 84.99923 * 13 2 1 15 15 C 1.50706 * 109.47510 * 180.02562 * 14 13 2 16 16 C 1.34323 * 126.16372 * 94.99516 * 15 14 13 17 17 O 1.34754 * 107.11038 * 180.02562 * 16 15 14 18 18 C 1.33958 * 107.75684 * 0.02562 * 17 16 15 19 19 N 1.30254 * 108.76425 * 359.72292 * 18 17 16 20 20 H 1.09003 * 109.46775 * 300.00270 * 1 2 3 21 21 H 1.09001 * 109.46990 * 60.00110 * 1 2 3 22 22 H 1.08994 * 109.47308 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47527 * 64.99784 * 4 2 1 24 24 H 1.09001 * 109.47054 * 304.99874 * 4 2 1 25 25 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 26 26 H 1.00898 * 111.00527 * 208.95764 * 13 2 1 27 27 H 1.08995 * 109.47485 * 300.00201 * 14 13 2 28 28 H 1.09005 * 109.46756 * 60.00060 * 14 13 2 29 29 H 1.08003 * 126.44546 * 0.03403 * 16 15 14 30 30 H 1.07998 * 125.62173 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5415 -1.1053 2.4104 9 14 3.3015 -2.1085 3.6955 10 1 2.9467 -1.1648 4.7859 11 1 2.0620 -2.6945 3.1251 12 1 4.1574 -3.1935 4.2389 13 7 2.0197 -0.6926 -1.1993 14 6 2.0825 0.2224 -2.3469 15 6 2.5874 -0.5220 -3.5560 16 6 1.8312 -1.0953 -4.5067 17 8 2.6724 -1.6512 -5.4007 18 6 3.9240 -1.4126 -4.9872 19 7 3.8762 -0.7283 -3.8800 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.7517 -1.7714 1.2058 24 1 1.6054 -0.2616 2.1370 25 1 6.0262 -1.5157 3.1436 26 1 2.9173 -1.1206 -1.0286 27 1 1.0871 0.6161 -2.5526 28 1 2.7589 1.0461 -2.1182 29 1 0.7520 -1.1081 -4.5471 30 1 4.8244 -1.7307 -5.4916 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695841297.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:13 Heat of formation + Delta-G solvation = -11.276105 kcal Electronic energy + Delta-G solvation = -13536.730112 eV Core-core repulsion = 11139.406602 eV Total energy + Delta-G solvation = -2397.323510 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.18256 -38.43883 -35.95239 -34.70649 -32.94020 -30.56642 -29.59581 -26.38132 -24.43882 -23.60455 -22.00326 -21.09126 -18.98186 -18.42013 -17.45763 -16.72562 -16.40013 -16.05358 -15.67647 -15.46683 -14.63340 -14.29184 -13.66762 -13.52924 -13.44802 -13.17308 -12.56338 -12.43437 -12.31807 -12.04405 -11.73221 -11.49089 -11.29573 -11.21398 -10.77525 -9.84186 -9.28662 -8.29079 -6.33237 0.63549 1.35341 1.37999 1.50297 1.74059 2.08278 2.36248 3.04670 3.30761 3.62782 3.88634 4.15746 4.24326 4.50355 4.59395 4.67704 4.72839 4.89795 5.03739 5.04908 5.13744 5.22336 5.33819 5.39601 5.51702 5.67735 6.21237 6.32241 6.43948 6.73675 6.86240 7.31058 8.87616 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.035621 B = 0.007762 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.858175 B = 3606.667368 C = 4119.806005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.095 3.905 3 H 0.021 0.979 4 C -0.013 4.013 5 C -0.527 4.527 6 H 0.026 0.974 7 C 0.004 3.996 8 N -0.951 5.951 9 Si 0.954 3.046 10 H -0.266 1.266 11 H -0.246 1.246 12 H -0.286 1.286 13 N -0.677 5.677 14 C 0.142 3.858 15 C -0.043 4.043 16 C -0.043 4.043 17 O -0.210 6.210 18 C 0.177 3.823 19 N -0.536 5.536 20 H 0.061 0.939 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.024 0.976 24 H 0.027 0.973 25 H 0.265 0.735 26 H 0.338 0.662 27 H 0.111 0.889 28 H 0.016 0.984 29 H 0.251 0.749 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.672 -0.583 -13.036 16.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.015 4.015 3 H 0.039 0.961 4 C -0.050 4.050 5 C -0.565 4.565 6 H 0.044 0.956 7 C -0.193 4.193 8 N -0.592 5.592 9 Si 0.777 3.223 10 H -0.191 1.191 11 H -0.170 1.170 12 H -0.212 1.212 13 N -0.309 5.309 14 C 0.012 3.988 15 C -0.161 4.161 16 C -0.114 4.114 17 O -0.095 6.095 18 C -0.050 4.050 19 N -0.265 5.265 20 H 0.080 0.920 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.156 0.844 27 H 0.129 0.871 28 H 0.035 0.965 29 H 0.267 0.733 30 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges -10.642 -0.675 -12.800 16.660 hybrid contribution 0.872 0.093 0.697 1.120 sum -9.770 -0.581 -12.103 15.565 Atomic orbital electron populations 1.21740 0.92806 1.02188 1.01808 1.21418 0.96030 0.94684 0.89361 0.96062 1.19722 0.93824 0.96690 0.94809 1.21377 0.92411 1.34253 1.08497 0.95567 1.26028 0.95565 0.96864 1.00834 1.70091 1.08612 1.46823 1.33637 0.85606 0.79284 0.78551 0.78839 1.19079 1.16964 1.21240 1.60800 1.33745 1.31938 1.04434 1.20198 1.00279 0.91854 0.86458 1.21806 0.88675 1.05624 0.99990 1.25321 0.98133 0.98667 0.89279 1.84496 1.18095 1.60741 1.46211 1.28960 0.87895 0.96133 0.92025 1.70356 1.23078 1.17908 1.15186 0.91962 0.91486 0.92325 0.95770 0.95493 0.92614 0.84357 0.87052 0.96537 0.73287 0.69565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.41 71.98 0.68 -3.14 16 2 C 0.09 3.76 2.59 44.92 0.12 3.88 16 3 H 0.02 0.90 7.80 -2.39 -0.02 0.88 16 4 C -0.01 -0.61 3.64 29.85 0.11 -0.50 16 5 C -0.53 -30.93 8.67 25.60 0.22 -30.71 16 6 H 0.03 1.72 7.73 -2.91 -0.02 1.69 16 7 C 0.00 0.23 5.47 84.65 0.46 0.69 16 8 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 9 Si 0.95 45.21 27.47 68.60 1.88 47.09 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 N -0.68 -26.67 6.30 -495.58 -3.12 -29.79 16 14 C 0.14 4.73 6.02 85.56 0.52 5.24 16 15 C -0.04 -1.35 6.62 41.26 0.27 -1.08 16 16 C -0.04 -1.01 12.08 66.92 0.81 -0.20 16 17 O -0.21 -4.88 10.77 -3.66 -0.04 -4.92 16 18 C 0.18 4.22 13.23 130.48 1.73 5.95 16 19 N -0.54 -18.30 11.29 -304.08 -3.43 -21.73 16 20 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.07 1.66 7.45 -2.39 -0.02 1.64 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 24 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 25 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 26 H 0.34 16.13 7.20 -89.70 -0.65 15.48 16 27 H 0.11 2.90 7.44 -2.39 -0.02 2.88 16 28 H 0.02 0.63 8.06 -2.38 -0.02 0.61 16 29 H 0.25 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.29 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -73.88 259.45 0.93 -72.95 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.43 Total: 17.08 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 4.91 Total: -19.87 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -6.26 Total: -112.32 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.04 Total: -4.92 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.09 kcal Total: -73.88 0.93 -72.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841297.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.669 kcal (2) G-P(sol) polarization free energy of solvation -73.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds