Wall clock time and date at job start Mon Mar 30 2020 02:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46499 * 109.47215 * 239.99058 * 2 1 3 14 14 C 1.34428 * 126.82659 * 325.01205 * 13 2 1 15 15 N 1.30828 * 108.08121 * 179.97438 * 14 13 2 16 16 C 1.33240 * 109.82685 * 359.97438 * 15 14 13 17 17 C 1.50701 * 125.52514 * 180.02562 * 16 15 14 18 18 N 1.46900 * 109.47256 * 90.02902 * 17 16 15 19 19 N 1.30709 * 108.94743 * 359.75899 * 16 15 14 20 20 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 21 21 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 23 23 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 24 24 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 25 25 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 26 26 H 1.08006 * 125.95804 * 359.97438 * 14 13 2 27 27 H 1.09003 * 109.46930 * 210.02602 * 17 16 15 28 28 H 1.09004 * 109.47051 * 330.02434 * 17 16 15 29 29 H 1.00894 * 111.00191 * 56.04336 * 18 17 16 30 30 H 1.00902 * 110.99657 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 2.5663 1.5388 5.5860 11 1 0.2303 1.2889 4.9849 12 1 1.3056 -0.3715 6.3874 13 7 2.0184 -0.6908 -1.1960 14 6 1.4558 -1.7520 -1.7997 15 7 2.1932 -2.0696 -2.8327 16 6 3.2301 -1.2375 -2.9207 17 6 4.3020 -1.2830 -3.9790 18 7 3.9009 -0.4473 -5.1186 19 7 3.1637 -0.3718 -1.9437 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 3.1263 -0.7995 1.2057 24 1 1.6053 -1.7197 1.2953 25 1 2.9286 -2.0221 3.0617 26 1 0.5526 -2.2547 -1.4867 27 1 5.2377 -0.9076 -3.5648 28 1 4.4393 -2.3115 -4.3132 29 1 3.7049 0.4973 -4.8230 30 1 4.6036 -0.4616 -5.8425 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695861457.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:47 Heat of formation + Delta-G solvation = 71.122121 kcal Electronic energy + Delta-G solvation = -13580.467130 eV Core-core repulsion = 11219.009426 eV Total energy + Delta-G solvation = -2361.457704 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.70034 -36.20697 -34.58571 -32.82428 -30.96281 -29.82232 -26.96490 -25.53682 -23.94157 -22.42717 -20.16111 -19.97977 -17.02241 -16.50752 -15.91736 -15.30936 -14.87822 -14.31331 -13.83679 -13.71968 -13.09607 -12.93299 -12.28501 -12.19758 -11.86111 -11.59913 -11.40013 -10.89242 -10.48932 -10.37285 -10.20322 -9.61700 -9.36576 -9.08299 -8.82895 -8.70493 -8.49716 -6.52997 -4.25690 2.05370 2.78319 3.19964 3.35774 3.38050 3.53668 4.34692 4.42180 4.68547 4.87528 5.14412 5.23702 5.32563 5.52591 5.56363 5.72608 5.89439 6.14732 6.33444 6.47376 6.61438 6.78765 6.96349 7.03561 7.15148 7.29000 7.35567 7.92254 8.24639 8.50562 8.66801 9.47483 10.87188 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.058436 B = 0.006599 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.043533 B = 4241.854142 C = 4369.694733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 H 0.095 0.905 4 C 0.007 3.993 5 C -0.604 4.604 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.906 5.906 9 Si 1.074 2.926 10 H -0.287 1.287 11 H -0.287 1.287 12 H -0.283 1.283 13 N -0.352 5.352 14 C 0.247 3.753 15 N -0.542 5.542 16 C 0.205 3.795 17 C 0.163 3.837 18 N -0.842 5.842 19 N -0.318 5.318 20 H 0.047 0.953 21 H 0.058 0.942 22 H 0.094 0.906 23 H 0.016 0.984 24 H 0.015 0.985 25 H 0.269 0.731 26 H 0.212 0.788 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.344 0.656 30 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.180 2.152 -10.992 11.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.055 3.945 3 H 0.113 0.887 4 C -0.031 4.031 5 C -0.643 4.643 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.541 5.541 9 Si 0.902 3.098 10 H -0.213 1.213 11 H -0.213 1.213 12 H -0.209 1.209 13 N -0.142 5.142 14 C -0.050 4.050 15 N -0.271 5.271 16 C -0.078 4.078 17 C 0.030 3.970 18 N -0.373 5.373 19 N -0.148 5.148 20 H 0.066 0.934 21 H 0.077 0.923 22 H 0.113 0.887 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.080 0.920 26 H 0.228 0.772 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.156 0.844 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.286 1.997 -9.432 9.726 hybrid contribution 0.516 0.469 -1.159 1.353 sum -0.770 2.466 -10.591 10.901 Atomic orbital electron populations 1.22078 0.93051 1.02688 1.02814 1.21799 0.94491 0.97341 0.80834 0.88675 1.19625 0.96596 0.96001 0.90907 1.21851 1.40148 1.10727 0.91543 0.92578 1.25892 0.94241 0.96945 1.01460 1.70755 1.35203 1.14386 1.33739 0.83467 0.76076 0.75210 0.75084 1.21331 1.21277 1.20869 1.51034 1.17443 1.23408 1.22282 1.25805 0.99582 0.89415 0.90174 1.70323 1.06600 1.29597 1.20556 1.23884 0.96396 0.91850 0.95712 1.19793 0.90737 0.99609 0.86837 1.58562 1.50355 1.16409 1.12012 1.77903 1.04799 1.24338 1.07756 0.93367 0.92254 0.88714 0.96620 0.96691 0.92008 0.77165 0.93289 0.88607 0.84371 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.66 37.16 0.32 -2.12 16 2 C 0.16 3.12 3.39 -67.93 -0.23 2.89 16 3 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 4 C 0.01 0.17 4.08 -27.88 -0.11 0.05 16 5 C -0.60 -15.98 8.41 -34.44 -0.29 -16.27 16 6 H 0.06 1.42 7.06 -52.49 -0.37 1.05 16 7 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 8 N -0.91 -27.02 13.65 55.43 0.76 -26.26 16 9 Si 1.07 24.17 29.90 -169.99 -5.08 19.09 16 10 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.35 -6.89 3.55 -56.11 -0.20 -7.09 16 14 C 0.25 4.39 11.78 -90.66 -1.07 3.32 16 15 N -0.54 -10.15 11.19 -11.98 -0.13 -10.28 16 16 C 0.20 3.71 7.65 -156.86 -1.20 2.51 16 17 C 0.16 2.22 7.41 -4.97 -0.04 2.18 16 18 N -0.84 -9.91 9.61 -11.40 -0.11 -10.02 16 19 N -0.32 -6.37 12.70 32.42 0.41 -5.96 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.91 7.22 -51.93 -0.38 0.53 16 22 H 0.09 1.63 6.95 -51.93 -0.36 1.27 16 23 H 0.02 0.43 8.01 -51.93 -0.42 0.01 16 24 H 0.01 0.38 8.00 -51.93 -0.42 -0.04 16 25 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 26 H 0.21 2.94 7.32 -52.48 -0.38 2.56 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.34 4.05 8.98 -39.29 -0.35 3.70 16 30 H 0.35 2.94 9.08 -39.29 -0.36 2.58 16 LS Contribution 261.18 15.07 3.94 3.94 Total: -1.00 -31.89 261.18 -6.95 -38.84 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.81 Total: 4.75 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -2.71 Total: -7.01 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.73 Total: -59.61 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.08 Total: 19.09 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.89 -6.95 -38.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695861457.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.966 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds