Wall clock time and date at job start Mon Mar 30 2020 02:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46499 * 109.47215 * 239.99058 * 2 1 3 14 14 C 1.34428 * 126.82659 * 325.01205 * 13 2 1 15 15 N 1.30828 * 108.08121 * 179.97438 * 14 13 2 16 16 C 1.33240 * 109.82685 * 359.97438 * 15 14 13 17 17 C 1.50701 * 125.52514 * 180.02562 * 16 15 14 18 18 N 1.46900 * 109.47256 * 90.02902 * 17 16 15 19 19 N 1.30709 * 108.94743 * 359.75899 * 16 15 14 20 20 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 21 21 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 23 23 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 24 24 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 25 25 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 26 26 H 1.08006 * 125.95804 * 359.97438 * 14 13 2 27 27 H 1.09003 * 109.46930 * 210.02602 * 17 16 15 28 28 H 1.09004 * 109.47051 * 330.02434 * 17 16 15 29 29 H 1.00894 * 111.00191 * 56.04336 * 18 17 16 30 30 H 1.00902 * 110.99657 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 2.5663 1.5388 5.5860 11 1 0.2303 1.2889 4.9849 12 1 1.3056 -0.3715 6.3874 13 7 2.0184 -0.6908 -1.1960 14 6 1.4558 -1.7520 -1.7997 15 7 2.1932 -2.0696 -2.8327 16 6 3.2301 -1.2375 -2.9207 17 6 4.3020 -1.2830 -3.9790 18 7 3.9009 -0.4473 -5.1186 19 7 3.1637 -0.3718 -1.9437 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 3.1263 -0.7995 1.2057 24 1 1.6053 -1.7197 1.2953 25 1 2.9286 -2.0221 3.0617 26 1 0.5526 -2.2547 -1.4867 27 1 5.2377 -0.9076 -3.5648 28 1 4.4393 -2.3115 -4.3132 29 1 3.7049 0.4973 -4.8230 30 1 4.6036 -0.4616 -5.8425 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695861457.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:47 Heat of formation + Delta-G solvation = 48.653702 kcal Electronic energy + Delta-G solvation = -13581.441434 eV Core-core repulsion = 11219.009426 eV Total energy + Delta-G solvation = -2362.432008 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.13367 -37.80992 -35.83179 -34.68075 -32.42690 -31.31388 -28.71887 -26.77038 -25.69451 -24.12294 -21.65834 -21.38667 -19.01577 -17.96672 -17.15856 -16.61632 -16.25179 -15.76986 -15.55159 -15.19728 -14.64819 -14.30290 -14.03538 -13.52130 -13.32139 -13.18264 -12.96010 -12.60480 -12.19296 -12.05208 -11.89986 -11.13946 -10.87909 -10.82379 -10.61073 -10.46976 -9.76146 -8.73704 -6.46739 0.62280 1.32669 1.55454 1.62926 1.80011 1.82817 2.55782 3.12092 3.12531 3.45520 3.74898 3.83437 3.98209 4.08187 4.21851 4.46832 4.61315 4.71269 4.82023 4.96763 5.06472 5.13918 5.35182 5.43990 5.73564 5.96692 6.00410 6.09791 6.45683 6.51300 7.07817 7.36311 8.66350 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.058436 B = 0.006599 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.043533 B = 4241.854142 C = 4369.694733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.167 3.833 3 H 0.085 0.915 4 C 0.015 3.985 5 C -0.606 4.606 6 H 0.070 0.930 7 C -0.036 4.036 8 N -0.938 5.938 9 Si 1.122 2.878 10 H -0.278 1.278 11 H -0.258 1.258 12 H -0.286 1.286 13 N -0.367 5.367 14 C 0.251 3.749 15 N -0.559 5.559 16 C 0.206 3.794 17 C 0.164 3.836 18 N -0.843 5.843 19 N -0.354 5.354 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.089 0.911 23 H -0.026 1.026 24 H 0.002 0.998 25 H 0.252 0.748 26 H 0.246 0.754 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.344 0.656 30 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.371 2.933 -11.658 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.066 3.934 3 H 0.103 0.897 4 C -0.023 4.023 5 C -0.644 4.644 6 H 0.088 0.912 7 C -0.234 4.234 8 N -0.575 5.575 9 Si 0.943 3.057 10 H -0.204 1.204 11 H -0.182 1.182 12 H -0.212 1.212 13 N -0.157 5.157 14 C -0.045 4.045 15 N -0.287 5.287 16 C -0.078 4.078 17 C 0.031 3.969 18 N -0.377 5.377 19 N -0.184 5.184 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.108 0.892 23 H -0.008 1.008 24 H 0.020 0.980 25 H 0.061 0.939 26 H 0.262 0.738 27 H 0.077 0.923 28 H 0.125 0.875 29 H 0.156 0.844 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.472 2.789 -10.148 10.810 hybrid contribution 0.930 0.185 -1.053 1.417 sum -1.542 2.973 -11.200 11.690 Atomic orbital electron populations 1.22015 0.89908 1.03950 1.03812 1.21515 0.96710 0.95876 0.79301 0.89677 1.19457 0.93892 0.95804 0.93188 1.22256 1.39084 1.10932 0.92125 0.91220 1.27463 0.93583 0.96969 1.05342 1.70905 1.37678 1.16027 1.32849 0.82878 0.77219 0.74210 0.71435 1.20368 1.18215 1.21222 1.50941 1.17930 1.24342 1.22457 1.26557 1.00086 0.88457 0.89384 1.70393 1.07178 1.29978 1.21173 1.24714 0.96655 0.90680 0.95707 1.19927 0.89703 1.00754 0.86510 1.58513 1.51249 1.16180 1.11747 1.77869 1.05645 1.25968 1.08875 0.90759 0.90899 0.89206 1.00809 0.97997 0.93852 0.73832 0.92264 0.87495 0.84372 0.81856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 8.66 71.98 0.62 -3.64 16 2 C 0.17 6.60 3.39 44.99 0.15 6.76 16 3 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 4 C 0.01 0.74 4.08 29.85 0.12 0.86 16 5 C -0.61 -31.97 8.41 25.60 0.22 -31.76 16 6 H 0.07 3.43 7.06 -2.91 -0.02 3.41 16 7 C -0.04 -1.99 5.46 84.65 0.46 -1.53 16 8 N -0.94 -57.15 13.65 21.45 0.29 -56.86 16 9 Si 1.12 47.73 29.90 68.60 2.05 49.79 16 10 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 12 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 13 N -0.37 -14.16 3.55 -331.44 -1.18 -15.34 16 14 C 0.25 8.56 11.78 180.36 2.12 10.68 16 15 N -0.56 -20.18 11.19 -191.80 -2.15 -22.33 16 16 C 0.21 7.27 7.65 138.63 1.06 8.33 16 17 C 0.16 4.23 7.41 85.56 0.63 4.86 16 18 N -0.84 -18.31 9.61 -190.00 -1.83 -20.14 16 19 N -0.35 -14.13 12.70 -51.34 -0.65 -14.78 16 20 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 21 H 0.07 2.03 7.22 -2.39 -0.02 2.01 16 22 H 0.09 2.87 6.95 -2.39 -0.02 2.86 16 23 H -0.03 -1.53 8.01 -2.39 -0.02 -1.55 16 24 H 0.00 0.09 8.00 -2.39 -0.02 0.07 16 25 H 0.25 15.80 7.22 -92.71 -0.67 15.13 16 26 H 0.25 6.19 7.32 -2.91 -0.02 6.17 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 29 H 0.34 7.60 8.98 -89.70 -0.81 6.80 16 30 H 0.37 5.41 9.08 -89.69 -0.81 4.60 16 Total: -1.00 -69.17 261.18 1.58 -67.59 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -0.36 Total: 17.51 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 5.39 Total: -5.44 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -5.51 Total: -129.44 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.05 Total: 49.79 kcal Total: -69.17 1.58 -67.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695861457.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.245 kcal (2) G-P(sol) polarization free energy of solvation -69.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds