Wall clock time and date at job start Mon Mar 30 2020 02:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 C 1.52999 * 109.46811 * 65.00188 * 3 2 1 6 6 C 1.52999 * 109.47054 * 185.00114 * 3 2 1 7 7 C 1.50698 * 109.47067 * 175.00191 * 6 3 2 8 8 N 1.30453 * 126.07396 * 269.69397 * 7 6 3 9 9 O 1.21275 * 110.68630 * 179.79785 * 8 7 6 10 10 C 1.34763 * 109.53450 * 0.46352 * 9 8 7 11 11 C 1.40329 * 126.79632 * 179.69643 * 10 9 8 12 12 H 1.07994 * 119.99972 * 180.02562 * 11 10 9 13 13 C 1.40466 * 120.00166 * 0.02562 * 11 10 9 14 14 N 1.30512 * 119.99898 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00081 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47358 * 90.00556 * 15 13 11 17 17 H 1.48503 * 109.47474 * 210.00581 * 15 13 11 18 18 H 1.48507 * 109.47362 * 330.00022 * 15 13 11 19 19 N 1.33328 * 106.40715 * 359.71222 * 10 9 8 20 20 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 24 24 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 25 25 H 1.09009 * 109.47170 * 300.00068 * 5 3 2 26 26 H 1.09001 * 109.47273 * 59.99848 * 5 3 2 27 27 H 1.09002 * 109.46911 * 179.97438 * 5 3 2 28 28 H 1.09003 * 109.47054 * 295.00296 * 6 3 2 29 29 H 1.08997 * 109.47369 * 55.00377 * 6 3 2 30 30 H 0.96995 * 119.99680 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1258 7 6 4.0570 2.8634 -0.2492 8 7 4.2267 3.5235 -1.3615 9 8 4.6295 4.6451 -1.1369 10 6 4.7716 4.8150 0.1925 11 6 5.2198 5.9715 0.8488 12 1 5.2924 5.9871 1.9262 13 6 5.5742 7.1088 0.1045 14 7 5.4861 7.0902 -1.1975 15 14 6.1716 8.6480 0.9782 16 1 7.6480 8.5913 1.1271 17 1 5.8001 9.8451 0.1819 18 1 5.5415 8.7315 2.3204 19 7 4.4023 3.6667 0.7605 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 0.5488 2.1252 1.3970 26 1 2.0699 1.5874 2.1492 27 1 1.9990 3.1541 1.3076 28 1 4.0029 0.9835 0.7596 29 1 3.8570 0.8801 -1.0113 30 1 5.7305 7.8757 -1.7114 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696217328.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:04 Heat of formation + Delta-G solvation = 18.376075 kcal Electronic energy + Delta-G solvation = -13731.558557 eV Core-core repulsion = 11335.520862 eV Total energy + Delta-G solvation = -2396.037695 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.95206 -36.84661 -34.07065 -33.48604 -30.98881 -29.50268 -27.02370 -26.26231 -23.73922 -21.51234 -20.60489 -19.53577 -17.45998 -15.77381 -15.41123 -15.18139 -14.59913 -14.22817 -13.55077 -13.43122 -12.82322 -12.14567 -11.81444 -11.77207 -11.51656 -11.45953 -11.40545 -11.01812 -10.58579 -10.47890 -10.25356 -10.21758 -9.96688 -9.86803 -9.35685 -8.82935 -8.18585 -7.05175 -4.97876 2.81454 2.97522 3.03420 3.33786 3.75669 3.96272 4.95245 5.07195 5.15959 5.26755 5.39084 5.51700 5.58434 5.84119 5.87757 5.95399 6.01884 6.13274 6.26317 6.29795 6.33670 6.47671 6.67128 6.83902 6.88628 6.89589 7.51629 7.94594 8.16625 8.38078 8.51705 9.94324 10.46485 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.067699 B = 0.006909 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.498339 B = 4051.482311 C = 4221.033325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.083 4.083 4 H 0.068 0.932 5 C -0.143 4.143 6 C -0.012 4.012 7 C 0.163 3.837 8 N -0.475 5.475 9 O 0.043 5.957 10 C 0.300 3.700 11 C -0.418 4.418 12 H 0.112 0.888 13 C 0.071 3.929 14 N -0.766 5.766 15 Si 0.935 3.065 16 H -0.264 1.264 17 H -0.273 1.273 18 H -0.257 1.257 19 N -0.610 5.610 20 H 0.056 0.944 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.443 -4.954 2.393 7.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.103 4.103 4 H 0.086 0.914 5 C -0.200 4.200 6 C -0.051 4.051 7 C -0.111 4.111 8 N -0.205 5.205 9 O -0.003 6.003 10 C 0.109 3.891 11 C -0.456 4.456 12 H 0.129 0.871 13 C -0.154 4.154 14 N -0.393 5.393 15 Si 0.758 3.242 16 H -0.189 1.189 17 H -0.198 1.198 18 H -0.180 1.180 19 N -0.354 5.354 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.628 -5.406 1.775 7.334 hybrid contribution 0.388 0.927 0.260 1.038 sum -4.241 -4.479 2.035 6.495 Atomic orbital electron populations 1.21809 0.96171 1.00964 1.01969 1.21565 0.95673 0.96543 1.01704 1.21082 0.94519 0.95590 0.99104 0.91399 1.21833 0.99631 1.02146 0.96391 1.19696 0.94677 0.88669 1.02071 1.24893 1.01117 0.98657 0.86415 1.74303 1.26145 0.95368 1.24649 1.85526 1.64806 1.23285 1.26695 1.24255 0.91206 0.93836 0.79780 1.18546 1.39521 0.92207 0.95312 0.87065 1.26190 0.93132 1.01176 0.94892 1.69642 1.31722 1.31252 1.06689 0.85852 0.79762 0.78428 0.80145 1.18902 1.19757 1.18011 1.72235 1.31712 1.02452 1.29046 0.92473 0.92911 0.93217 0.92199 0.92026 0.93571 0.92966 0.91451 0.90509 0.91129 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.67 37.16 0.36 -1.40 16 2 C -0.12 -1.54 5.40 -26.73 -0.14 -1.68 16 3 C -0.08 -1.41 2.38 -90.62 -0.22 -1.62 16 4 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 5 C -0.14 -2.46 8.76 37.16 0.33 -2.13 16 6 C -0.01 -0.23 5.32 -27.88 -0.15 -0.38 16 7 C 0.16 4.14 6.63 -156.78 -1.04 3.10 16 8 N -0.47 -13.25 12.15 31.51 0.38 -12.86 16 9 O 0.04 1.28 9.74 15.11 0.15 1.43 16 10 C 0.30 8.66 7.82 -16.36 -0.13 8.53 16 11 C -0.42 -11.18 9.48 -37.96 -0.36 -11.54 16 12 H 0.11 2.80 7.85 -52.49 -0.41 2.39 16 13 C 0.07 1.73 5.50 -17.27 -0.10 1.64 16 14 N -0.77 -19.79 12.06 55.57 0.67 -19.12 16 15 Si 0.94 17.77 29.56 -169.99 -5.03 12.74 16 16 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 17 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 18 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 19 N -0.61 -16.75 10.92 -11.51 -0.13 -16.88 16 20 H 0.06 0.66 6.56 -51.93 -0.34 0.31 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.69 6.57 -51.92 -0.34 0.35 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.41 6.83 -51.93 -0.35 1.06 16 28 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.29 6.66 8.29 -40.82 -0.34 6.32 16 LS Contribution 257.96 15.07 3.89 3.89 Total: -1.00 -29.88 257.96 -5.47 -35.35 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -3.96 Total: 0.93 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.45 Total: -5.48 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.93 Total: -48.86 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.15 Total: 1.43 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.88 -5.47 -35.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696217328.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.727 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds