Wall clock time and date at job start Mon Mar 30 2020 02:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09003 * 109.46971 * 305.71786 * 3 2 1 5 5 C 1.50695 * 109.47003 * 185.72012 * 3 2 1 6 6 H 1.07999 * 120.00278 * 335.03321 * 5 3 2 7 7 C 1.37883 * 119.99919 * 155.03838 * 5 3 2 8 8 N 1.31518 * 119.99883 * 5.57655 * 7 5 3 9 9 Si 1.86801 * 120.00174 * 185.58442 * 7 5 3 10 10 H 1.48506 * 109.46752 * 269.99653 * 9 7 5 11 11 H 1.48499 * 109.46952 * 29.99450 * 9 7 5 12 12 H 1.48492 * 109.47235 * 149.99809 * 9 7 5 13 13 N 1.46495 * 109.46979 * 65.71847 * 3 2 1 14 14 C 1.40434 * 120.00178 * 275.00016 * 13 3 2 15 15 C 1.35886 * 126.78561 * 0.02562 * 14 13 3 16 16 N 1.36267 * 105.95607 * 179.97438 * 15 14 13 17 17 C 1.46500 * 125.91222 * 179.97438 * 16 15 14 18 18 N 1.28708 * 108.16394 * 359.97438 * 16 15 14 19 19 N 1.28585 * 110.37621 * 359.72127 * 18 16 15 20 20 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 21 21 H 1.09000 * 109.46865 * 59.99923 * 1 2 3 22 22 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 24 24 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 25 25 H 0.97003 * 120.00164 * 355.08514 * 8 7 5 26 26 H 0.97000 * 120.00577 * 95.00724 * 13 3 2 27 27 H 1.08003 * 127.01801 * 0.02969 * 15 14 13 28 28 H 1.08995 * 109.47506 * 90.00475 * 17 16 15 29 29 H 1.09010 * 109.46818 * 210.00184 * 17 16 15 30 30 H 1.09001 * 109.47758 * 329.99549 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5955 1.9851 -0.8344 5 6 3.5403 1.4448 -0.1416 6 1 4.1137 0.5851 0.1723 7 6 4.1810 2.5446 -0.6718 8 7 3.4971 3.6324 -0.9520 9 14 6.0205 2.4893 -0.9925 10 1 6.7476 2.9581 0.2146 11 1 6.4268 1.0956 -1.3051 12 1 6.3493 3.3704 -2.1417 13 7 1.6673 2.0922 1.2590 14 6 0.4004 2.6824 1.3965 15 6 -0.5809 2.7307 0.4578 16 7 -1.6200 3.3962 1.0361 17 6 -2.9075 3.6945 0.4041 18 7 -1.2741 3.7172 2.2336 19 7 -0.0824 3.3029 2.4817 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.5321 3.6376 -0.8530 26 1 2.2955 2.1149 1.9977 27 1 -0.5450 2.3239 -0.5420 28 1 -3.6039 2.8780 0.5951 29 1 -3.3098 4.6193 0.8180 30 1 -2.7671 3.8085 -0.6708 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701740538.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:37 Heat of formation + Delta-G solvation = 93.919925 kcal Electronic energy + Delta-G solvation = -14132.441136 eV Core-core repulsion = 11771.972019 eV Total energy + Delta-G solvation = -2360.469117 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.32736 -36.53744 -34.01211 -32.44317 -31.24277 -29.05047 -27.44147 -26.00373 -23.06000 -21.89208 -20.97571 -19.61964 -17.36446 -16.75614 -16.00378 -15.03977 -14.71616 -13.87188 -13.66796 -13.34662 -13.05012 -12.84330 -12.73146 -12.41624 -11.26511 -11.11279 -10.89713 -10.80645 -10.48506 -10.33252 -10.19028 -9.97109 -9.50688 -8.99036 -8.70142 -8.59353 -6.59509 -6.47598 -4.34392 2.26691 2.92326 3.37554 3.39213 3.55701 3.62573 4.35174 4.42746 4.84366 5.12952 5.32394 5.37021 5.47187 5.82281 5.90617 6.01052 6.07139 6.27981 6.47309 6.57102 6.61974 6.81978 7.01276 7.19994 7.26558 7.84421 8.27000 8.49806 8.67099 8.96571 9.38785 9.45778 10.83689 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.040571 B = 0.009302 C = 0.008491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.990135 B = 3009.536583 C = 3296.777015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.263 3.737 4 H 0.036 0.964 5 C -0.605 4.605 6 H 0.057 0.943 7 C 0.031 3.969 8 N -0.888 5.888 9 Si 1.072 2.928 10 H -0.286 1.286 11 H -0.286 1.286 12 H -0.283 1.283 13 N -0.699 5.699 14 C 0.279 3.721 15 C -0.149 4.149 16 N -0.295 5.295 17 C 0.093 3.907 18 N -0.089 5.089 19 N -0.328 5.328 20 H 0.056 0.944 21 H 0.044 0.956 22 H 0.035 0.965 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.276 0.724 26 H 0.392 0.608 27 H 0.179 0.821 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 -2.804 -1.134 9.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.162 3.838 4 H 0.054 0.946 5 C -0.644 4.644 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.521 5.521 9 Si 0.899 3.101 10 H -0.213 1.213 11 H -0.212 1.212 12 H -0.209 1.209 13 N -0.336 5.336 14 C 0.045 3.955 15 C -0.302 4.302 16 N -0.096 5.096 17 C -0.050 4.050 18 N -0.068 5.068 19 N -0.202 5.202 20 H 0.075 0.925 21 H 0.063 0.937 22 H 0.054 0.946 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.227 0.773 27 H 0.196 0.804 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.202 -1.281 -0.558 8.320 hybrid contribution -0.948 -1.385 -0.324 1.710 sum -9.150 -2.666 -0.882 9.571 Atomic orbital electron populations 1.22092 0.98059 0.99685 1.01119 1.21962 0.93537 1.00080 1.00767 1.18782 0.95073 0.87640 0.82337 0.94593 1.22103 0.91275 1.05029 1.45977 0.92507 1.26005 1.07081 0.91827 0.92849 1.70723 1.09999 1.27264 1.44116 0.83509 0.73880 0.75620 0.77063 1.21257 1.21184 1.20903 1.46063 1.08757 1.60630 1.18168 1.19389 0.90175 0.95906 0.90008 1.22676 0.90238 1.14593 1.02717 1.46803 1.13483 1.38536 1.10792 1.22001 0.81140 1.03192 0.98635 1.77948 1.09638 1.20217 0.98996 1.74956 1.02890 1.18229 1.24124 0.92482 0.93733 0.94608 0.92355 0.93179 0.91239 0.77283 0.80364 0.90060 0.88879 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.34 37.16 0.31 -2.36 16 2 C -0.12 -2.52 5.58 -26.73 -0.15 -2.67 16 3 C 0.26 6.18 1.80 -69.09 -0.12 6.06 16 4 H 0.04 0.91 6.02 -51.93 -0.31 0.60 16 5 C -0.60 -15.83 8.50 -34.44 -0.29 -16.13 16 6 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 7 C 0.03 0.85 5.45 -17.82 -0.10 0.75 16 8 N -0.89 -25.70 13.63 55.43 0.76 -24.94 16 9 Si 1.07 23.98 29.91 -169.99 -5.08 18.90 16 10 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.70 -16.25 5.23 -55.13 -0.29 -16.54 16 14 C 0.28 6.21 6.96 -153.40 -1.07 5.15 16 15 C -0.15 -2.86 8.49 -16.42 -0.14 -3.00 16 16 N -0.29 -5.04 3.77 -67.66 -0.25 -5.30 16 17 C 0.09 0.96 11.40 59.85 0.68 1.64 16 18 N -0.09 -1.81 13.15 60.35 0.79 -1.02 16 19 N -0.33 -7.48 12.40 31.08 0.39 -7.10 16 20 H 0.06 1.07 5.35 -51.93 -0.28 0.79 16 21 H 0.04 0.72 6.68 -51.93 -0.35 0.38 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.28 8.06 6.78 -40.82 -0.28 7.78 16 26 H 0.39 9.35 8.72 -40.82 -0.36 9.00 16 27 H 0.18 3.15 5.62 -52.48 -0.30 2.86 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 251.77 15.07 3.79 3.79 Total: -1.00 -30.92 251.77 -4.38 -35.31 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -3.61 Total: 7.44 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -0.88 Total: -10.55 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 1.39 Total: -54.89 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.08 Total: 18.90 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.92 -4.38 -35.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701740538.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.228 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds