Wall clock time and date at job start Mon Mar 30 2020 02:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.40424 * 120.00066 * 84.99969 * 13 3 2 15 15 C 1.35878 * 126.78970 * 0.02562 * 14 13 3 16 16 N 1.36271 * 105.96080 * 180.02562 * 15 14 13 17 17 C 1.46492 * 125.92173 * 179.97438 * 16 15 14 18 18 N 1.28713 * 108.15838 * 359.97438 * 16 15 14 19 19 N 1.28586 * 110.38080 * 359.72468 * 18 16 15 20 20 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 21 21 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 22 22 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 24 24 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 25 25 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 26 26 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 27 27 H 1.08003 * 127.02169 * 0.02624 * 15 14 13 28 28 H 1.08998 * 109.47728 * 89.99497 * 17 16 15 29 29 H 1.09000 * 109.47134 * 210.00015 * 17 16 15 30 30 H 1.09002 * 109.47159 * 329.99624 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.3840 2.6881 -1.3718 15 6 -0.5858 2.7333 -0.4211 16 7 -1.6319 3.4008 -0.9843 17 6 -2.9120 3.6961 -0.3362 18 7 -1.3002 3.7268 -2.1845 19 7 -0.1070 3.3240 -2.4444 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5137 0.8899 25 1 3.8292 -0.0558 2.9526 26 1 2.2719 2.1232 -1.9978 27 1 -0.5375 2.3238 0.5771 28 1 -2.8489 4.6585 0.1714 29 1 -3.7001 3.7330 -1.0884 30 1 -3.1397 2.9163 0.3906 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701740541.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:39 Heat of formation + Delta-G solvation = 101.357356 kcal Electronic energy + Delta-G solvation = -14015.259158 eV Core-core repulsion = 11655.112552 eV Total energy + Delta-G solvation = -2360.146606 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.41315 -36.40525 -34.07283 -32.51091 -30.79877 -29.26509 -27.53618 -26.25070 -23.03301 -21.83452 -21.06977 -19.31188 -17.46410 -16.21797 -16.05521 -15.08367 -14.95136 -14.20465 -13.54741 -13.19913 -13.00831 -12.69306 -12.56593 -11.77192 -11.42107 -11.20252 -10.92376 -10.91278 -10.42189 -10.28284 -10.10896 -9.81749 -9.63031 -9.14721 -8.98633 -8.45608 -6.63049 -6.15731 -4.22550 2.20072 2.86278 3.24734 3.31506 3.34995 3.51946 4.21543 4.45787 4.82786 5.11270 5.16664 5.33659 5.43629 5.93423 6.16524 6.20538 6.27212 6.39641 6.51455 6.92993 6.95888 7.20144 7.23967 7.49761 7.69321 7.83408 8.09908 8.35100 8.76356 8.90273 9.27941 9.46062 10.90026 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.051069 B = 0.008184 C = 0.007722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.147457 B = 3420.362421 C = 3625.204619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.289 3.711 4 H 0.034 0.966 5 C -0.527 4.527 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.705 5.705 14 C 0.280 3.720 15 C -0.138 4.138 16 N -0.294 5.294 17 C 0.092 3.908 18 N -0.090 5.090 19 N -0.326 5.326 20 H 0.041 0.959 21 H 0.045 0.955 22 H 0.029 0.971 23 H 0.036 0.964 24 H 0.099 0.901 25 H 0.264 0.736 26 H 0.395 0.605 27 H 0.186 0.814 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.115 2.352 -0.613 9.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.186 3.814 4 H 0.052 0.948 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.341 5.341 14 C 0.046 3.954 15 C -0.291 4.291 16 N -0.095 5.095 17 C -0.050 4.050 18 N -0.068 5.068 19 N -0.200 5.200 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.117 0.883 25 H 0.074 0.926 26 H 0.229 0.771 27 H 0.203 0.797 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.539 2.877 -1.521 10.079 hybrid contribution 1.379 -0.599 1.060 1.840 sum -8.160 2.278 -0.460 8.484 Atomic orbital electron populations 1.22076 0.99337 0.99115 1.00019 1.22056 0.91980 1.00684 1.02601 1.18626 0.94374 0.88326 0.80035 0.94832 1.21246 0.90812 1.38456 1.06028 0.91924 1.24862 0.98660 0.94753 0.95394 1.69869 1.35137 1.38228 1.09326 0.86443 0.84845 0.77571 0.78260 1.20595 1.21107 1.19789 1.44623 1.09760 1.61376 1.18320 1.19025 0.89870 0.96171 0.90323 1.22838 0.89981 1.13315 1.02977 1.46822 1.13695 1.38367 1.10626 1.22030 0.81449 1.03068 0.98491 1.77965 1.09657 1.20555 0.98667 1.74937 1.02777 1.18053 1.24259 0.93988 0.93642 0.95156 0.94507 0.88274 0.92633 0.77080 0.79746 0.89895 0.88852 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.33 37.16 0.31 -2.58 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 3 C 0.29 6.94 2.23 -69.08 -0.15 6.79 16 4 H 0.03 0.87 7.21 -51.93 -0.37 0.50 16 5 C -0.53 -13.79 8.73 -34.44 -0.30 -14.10 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -23.80 11.31 55.43 0.63 -23.18 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.71 -15.57 5.23 -55.12 -0.29 -15.86 16 14 C 0.28 5.90 6.92 -153.40 -1.06 4.84 16 15 C -0.14 -2.53 8.50 -16.43 -0.14 -2.67 16 16 N -0.29 -4.75 3.77 -67.67 -0.26 -5.00 16 17 C 0.09 0.88 11.40 59.84 0.68 1.56 16 18 N -0.09 -1.71 13.15 60.35 0.79 -0.91 16 19 N -0.33 -6.96 12.40 31.07 0.39 -6.58 16 20 H 0.04 0.77 6.63 -51.93 -0.34 0.43 16 21 H 0.04 0.90 5.38 -51.93 -0.28 0.62 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.10 2.50 5.96 -51.93 -0.31 2.19 16 25 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 26 H 0.40 8.53 8.67 -40.82 -0.35 8.18 16 27 H 0.19 3.22 5.63 -52.48 -0.30 2.93 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 249.82 15.07 3.76 3.76 Total: -1.00 -29.46 249.82 -4.51 -33.97 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -3.61 Total: 6.07 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -0.90 Total: -7.74 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 1.26 Total: -51.53 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.46 -4.51 -33.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701740541.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.330 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds