Wall clock time and date at job start Mon Mar 30 2020 02:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.47148 * 184.99915 * 4 2 1 6 6 H 1.08004 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00136 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99679 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47086 * 89.99749 * 9 7 5 11 11 H 1.48500 * 109.47223 * 209.99861 * 9 7 5 12 12 H 1.48499 * 109.46912 * 330.00223 * 9 7 5 13 13 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 14 14 C 1.40433 * 119.99833 * 84.99942 * 13 2 1 15 15 C 1.35877 * 126.78904 * 0.02562 * 14 13 2 16 16 N 1.36258 * 105.96202 * 179.97438 * 15 14 13 17 17 C 1.46501 * 125.92108 * 179.97438 * 16 15 14 18 18 N 1.28708 * 108.16324 * 359.97438 * 16 15 14 19 19 N 1.28580 * 110.37660 * 359.72086 * 18 16 15 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 24 24 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 25 25 H 0.97002 * 119.99753 * 180.02562 * 8 7 5 26 26 H 0.96996 * 120.00792 * 265.00493 * 13 2 1 27 27 H 1.08007 * 127.01866 * 0.03789 * 15 14 13 28 28 H 1.09001 * 109.47494 * 90.00187 * 17 16 15 29 29 H 1.09006 * 109.47191 * 209.99992 * 17 16 15 30 30 H 1.08996 * 109.46905 * 329.99840 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1927 2.3583 8 7 3.5763 -1.8361 3.3005 9 14 6.0921 -1.0616 2.4366 10 1 6.4709 0.1613 3.1892 11 1 6.6441 -2.2566 3.1239 12 1 6.6412 -0.9849 1.0590 13 7 2.0183 -0.6907 -1.1961 14 6 2.1524 0.0098 -2.4058 15 6 1.8717 1.3216 -2.6219 16 7 2.1535 1.5537 -3.9347 17 6 2.0056 2.8335 -4.6323 18 7 2.5720 0.4538 -4.4558 19 7 2.5894 -0.4814 -3.5736 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6055 -0.2618 2.1370 24 1 1.7516 -1.7716 1.2057 25 1 4.0606 -2.2423 4.0363 26 1 2.2490 -1.6318 -1.1526 27 1 1.5019 2.0350 -1.9002 28 1 2.9340 3.3993 -4.5543 29 1 1.7786 2.6507 -5.6827 30 1 1.1941 3.4027 -4.1789 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701807737.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:50 Heat of formation + Delta-G solvation = 72.377185 kcal Electronic energy + Delta-G solvation = -13639.894572 eV Core-core repulsion = 11278.491292 eV Total energy + Delta-G solvation = -2361.403280 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.87334 -38.16317 -35.47044 -34.67170 -32.51582 -29.79159 -29.24345 -28.41360 -25.14569 -23.31848 -22.60745 -21.08676 -18.69973 -18.39216 -17.36969 -16.73260 -16.51479 -16.23957 -15.00675 -14.79052 -14.29524 -13.91431 -13.80759 -13.58139 -13.26071 -13.05405 -12.68522 -12.56276 -12.47691 -12.24129 -11.65343 -11.52260 -11.24968 -11.02552 -10.62450 -10.55094 -8.41777 -8.17631 -6.25135 0.76690 1.37586 1.39759 1.49871 1.66345 1.89328 2.41244 2.56131 3.17097 3.91302 3.94589 4.29047 4.36535 4.43935 4.55509 4.63047 4.70558 4.81138 4.89156 5.06548 5.17003 5.34704 5.48626 5.61805 5.84493 5.88895 6.26271 6.55183 6.89159 6.90858 7.42931 7.72940 8.93200 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.035901 B = 0.007978 C = 0.007091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.735751 B = 3508.987223 C = 3947.969932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.176 3.824 3 H 0.068 0.932 4 C 0.020 3.980 5 C -0.522 4.522 6 H 0.051 0.949 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.707 5.707 14 C 0.252 3.748 15 C -0.126 4.126 16 N -0.276 5.276 17 C 0.075 3.925 18 N -0.101 5.101 19 N -0.361 5.361 20 H 0.063 0.937 21 H 0.071 0.929 22 H 0.045 0.955 23 H 0.017 0.983 24 H -0.001 1.001 25 H 0.262 0.738 26 H 0.396 0.604 27 H 0.212 0.788 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.675 11.321 -11.348 17.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 H 0.086 0.914 4 C -0.017 4.017 5 C -0.560 4.560 6 H 0.069 0.931 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.343 5.343 14 C 0.018 3.982 15 C -0.280 4.280 16 N -0.076 5.076 17 C -0.064 4.064 18 N -0.080 5.080 19 N -0.233 5.233 20 H 0.082 0.918 21 H 0.090 0.910 22 H 0.065 0.935 23 H 0.036 0.964 24 H 0.018 0.982 25 H 0.071 0.929 26 H 0.230 0.770 27 H 0.229 0.771 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.202 10.724 -12.381 17.186 hybrid contribution 0.795 -0.152 1.352 1.576 sum -4.407 10.572 -11.029 15.901 Atomic orbital electron populations 1.22204 0.95246 1.01786 1.02100 1.20881 0.92890 0.95734 0.83414 0.91395 1.19273 0.94859 0.95042 0.92552 1.21489 0.93509 1.33600 1.07402 0.93102 1.25768 1.02619 0.95234 0.95637 1.70057 1.37146 1.37092 1.12708 0.85644 0.80842 0.77771 0.77929 1.19661 1.20919 1.20104 1.43944 1.74360 1.11852 1.04190 1.19258 0.99540 0.91116 0.88295 1.22995 1.18611 0.97843 0.88529 1.47394 1.41196 1.11067 1.07989 1.22676 1.06286 0.78170 0.99305 1.77935 1.18669 0.89527 1.21855 1.74924 1.24868 1.24168 0.99374 0.91803 0.91001 0.93532 0.96446 0.98222 0.92904 0.76973 0.77135 0.87843 0.87114 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 9.50 71.98 0.68 -4.08 16 2 C 0.18 6.71 2.54 44.99 0.11 6.82 16 3 H 0.07 2.49 7.21 -2.39 -0.02 2.48 16 4 C 0.02 0.99 4.52 29.85 0.13 1.13 16 5 C -0.52 -28.74 8.84 25.60 0.23 -28.51 16 6 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 9 Si 0.95 44.93 29.54 68.60 2.03 46.96 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 N -0.71 -27.98 5.02 -324.75 -1.63 -29.61 16 14 C 0.25 9.44 8.18 131.32 1.07 10.52 16 15 C -0.13 -3.64 10.80 83.46 0.90 -2.74 16 16 N -0.28 -7.17 3.77 -367.99 -1.39 -8.56 16 17 C 0.07 0.88 11.40 127.77 1.46 2.33 16 18 N -0.10 -3.48 13.15 37.02 0.49 -2.99 16 19 N -0.36 -14.58 12.40 -55.60 -0.69 -15.27 16 20 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 23 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 25 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 26 H 0.40 16.88 8.73 -92.71 -0.81 16.07 16 27 H 0.21 4.67 7.51 -2.91 -0.02 4.65 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -70.44 264.37 4.47 -65.97 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.32 Total: 12.27 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 5.05 Total: -13.77 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -2.93 Total: -111.43 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -70.44 4.47 -65.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701807737.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.345 kcal (2) G-P(sol) polarization free energy of solvation -70.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds