Wall clock time and date at job start Mon Mar 30 2020 02:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35877 * 127.02188 * 2 1 4 4 N 1.40424 * 126.78946 * 0.03177 * 3 2 1 5 5 C 1.46507 * 120.00314 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47071 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47021 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99512 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99976 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99747 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99573 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47518 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46923 * 120.00452 * 11 9 7 14 14 H 1.48500 * 109.47012 * 239.99485 * 11 9 7 15 15 N 1.34015 * 106.42670 * 180.02562 * 3 2 1 16 16 N 1.28589 * 109.07311 * 359.73055 * 15 3 2 17 17 N 1.28709 * 110.37692 * 0.45154 * 16 15 3 18 18 C 1.46506 * 125.91904 * 179.82188 * 17 16 15 19 19 H 1.09000 * 109.46875 * 270.02632 * 1 2 3 20 20 H 1.08995 * 109.47066 * 30.02724 * 1 2 3 21 21 H 1.08997 * 109.46932 * 150.02768 * 1 2 3 22 22 H 0.97005 * 120.00035 * 0.02562 * 4 3 2 23 23 H 1.08999 * 109.46765 * 299.99701 * 5 4 3 24 24 H 1.09000 * 109.47003 * 60.00117 * 5 4 3 25 25 H 1.09005 * 109.47280 * 299.99812 * 6 5 4 26 26 H 1.09005 * 109.47461 * 59.99782 * 6 5 4 27 27 H 0.97006 * 119.99456 * 180.02562 * 10 9 7 28 28 H 1.08999 * 109.46892 * 269.69206 * 18 17 16 29 29 H 1.09000 * 109.46803 * 29.68379 * 18 17 16 30 30 H 1.09000 * 109.47214 * 149.69172 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.0849 0.0000 4 7 1.9337 2.4334 0.0006 5 6 2.9479 3.4907 0.0000 6 6 2.2599 4.8573 0.0015 7 6 3.3031 5.9448 0.0014 8 1 4.3519 5.6870 0.0000 9 6 2.9187 7.2689 0.0022 10 7 1.6416 7.5828 0.0034 11 14 4.2119 8.6169 0.0014 12 1 5.5648 8.0049 -0.0006 13 1 4.0482 9.4591 -1.2107 14 1 4.0504 9.4584 1.2142 15 7 3.5797 0.6134 -0.0006 16 7 3.5455 -0.6720 0.0048 17 7 2.3275 -1.0880 -0.0005 18 6 1.8976 -2.4885 -0.0007 19 1 -0.3633 0.0005 1.0277 20 1 -0.3633 0.8897 -0.5142 21 1 -0.3633 -0.8902 -0.5134 22 1 0.9917 2.6650 0.0015 23 1 3.5709 3.3970 0.8894 24 1 3.5694 3.3974 -0.8906 25 1 1.6365 4.9513 -0.8877 26 1 1.6386 4.9504 0.8923 27 1 1.3711 8.5144 0.0035 28 1 1.7908 -2.8357 -1.0284 29 1 2.6421 -3.0971 0.5127 30 1 0.9404 -2.5749 0.5134 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701825346.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:31 Heat of formation + Delta-G solvation = 89.857259 kcal Electronic energy + Delta-G solvation = -13301.036232 eV Core-core repulsion = 10940.390945 eV Total energy + Delta-G solvation = -2360.645287 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.76390 -35.99423 -34.25812 -33.17443 -31.70629 -29.14044 -27.58583 -26.68745 -24.42997 -21.58056 -21.06548 -20.12575 -17.20186 -16.48463 -16.19237 -15.71169 -14.44157 -14.17022 -13.95004 -13.34686 -13.27950 -13.21287 -12.93318 -12.52805 -12.18355 -11.45426 -11.15034 -11.11019 -10.70024 -10.54562 -10.34365 -9.79452 -9.50204 -9.25358 -9.20320 -8.37653 -7.05993 -6.03352 -4.05244 1.83298 2.52689 3.14782 3.32565 3.39861 3.45523 3.92137 4.46956 4.54629 4.76130 4.86768 5.01037 5.11782 5.33908 5.49077 5.57400 5.69746 6.00116 6.09014 6.50644 6.51783 6.86499 6.90251 7.52430 7.73409 7.81772 8.00950 8.17911 8.39920 8.97254 9.02097 9.59112 11.08554 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.073644 B = 0.005563 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.115178 B = 5031.993354 C = 5381.057060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.120 4.120 3 C 0.278 3.722 4 N -0.715 5.715 5 C 0.140 3.860 6 C 0.013 3.987 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.058 3.942 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.284 1.284 15 N -0.303 5.303 16 N -0.078 5.078 17 N -0.290 5.290 18 C 0.090 3.910 19 H 0.069 0.931 20 H 0.079 0.921 21 H 0.063 0.937 22 H 0.404 0.596 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.260 0.740 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.667 -17.551 0.032 18.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.254 4.254 3 C 0.044 3.956 4 N -0.354 5.354 5 C 0.017 3.983 6 C -0.025 4.025 7 C -0.556 4.556 8 H 0.078 0.922 9 C -0.143 4.143 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.210 1.210 15 N -0.176 5.176 16 N -0.057 5.057 17 N -0.091 5.091 18 C -0.052 4.052 19 H 0.087 0.913 20 H 0.098 0.902 21 H 0.082 0.918 22 H 0.241 0.759 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.107 -17.708 0.032 17.979 hybrid contribution -0.870 1.021 -0.019 1.342 sum -3.977 -16.687 0.013 17.154 Atomic orbital electron populations 1.20020 0.86478 1.03124 1.02389 1.21101 0.95261 0.86016 1.23063 1.18710 0.89372 0.87266 1.00237 1.44260 1.09160 0.98823 1.83165 1.21557 0.90057 0.86791 0.99859 1.19302 0.96487 0.88985 0.97702 1.21113 0.93078 0.90623 1.50804 0.92203 1.24994 0.95380 0.98855 0.95119 1.69973 1.14732 1.17988 1.50778 0.86471 0.81901 0.81742 0.77546 1.19561 1.20993 1.20986 1.75045 1.19357 1.00203 1.23003 1.78102 1.01634 1.06398 1.19570 1.46789 1.04979 1.07762 1.49544 1.22067 1.02196 0.76686 1.04283 0.91273 0.90218 0.91771 0.75944 0.93469 0.93486 0.96053 0.96039 0.92998 0.89719 0.88504 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 9.85 36.01 0.35 -0.25 16 2 C -0.12 -1.75 7.05 -81.47 -0.57 -2.32 16 3 C 0.28 5.17 7.87 -153.40 -1.21 3.96 16 4 N -0.72 -13.69 5.79 -60.49 -0.35 -14.04 16 5 C 0.14 3.15 6.03 -4.04 -0.02 3.13 16 6 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 11 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 N -0.30 -6.16 12.13 31.07 0.38 -5.78 16 16 N -0.08 -1.37 13.15 60.35 0.79 -0.58 16 17 N -0.29 -3.96 3.77 -63.42 -0.24 -4.20 16 18 C 0.09 0.65 11.09 59.85 0.66 1.31 16 19 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 20 H 0.08 0.79 7.76 -51.93 -0.40 0.39 16 21 H 0.06 0.47 7.85 -51.93 -0.41 0.07 16 22 H 0.40 6.89 8.07 -40.82 -0.33 6.57 16 23 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.44 7.77 -51.93 -0.40 0.04 16 LS Contribution 265.02 15.07 3.99 3.99 Total: -1.00 -33.77 265.02 -5.09 -38.87 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -4.04 Total: -1.59 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -1.34 Total: -7.49 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 1.32 Total: -50.55 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.77 -5.09 -38.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701825346.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.724 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds