Wall clock time and date at job start Mon Mar 30 2020 02:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46724 * 2 1 4 4 C 1.53000 * 109.47623 * 240.00581 * 2 1 3 5 5 C 1.50699 * 109.47030 * 64.99149 * 4 2 1 6 6 H 1.07998 * 119.99948 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99517 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00507 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99655 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46952 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46819 * 120.00161 * 9 7 5 12 12 H 1.48507 * 109.46770 * 239.99746 * 9 7 5 13 13 N 1.46495 * 109.47449 * 119.99879 * 2 1 3 14 14 C 1.34950 * 126.03605 * 35.00308 * 13 2 1 15 15 C 1.35319 * 107.74352 * 179.97438 * 14 13 2 16 16 C 1.50706 * 126.03437 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.46976 * 90.00273 * 16 15 14 18 18 C 1.39862 * 107.92410 * 0.26648 * 15 14 13 19 19 N 1.30842 * 108.19992 * 359.55205 * 18 15 14 20 20 H 1.08995 * 109.47358 * 299.99463 * 1 2 3 21 21 H 1.08995 * 109.47468 * 60.00261 * 1 2 3 22 22 H 1.09005 * 109.46724 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47213 * 184.99842 * 4 2 1 24 24 H 1.09002 * 109.46521 * 304.99318 * 4 2 1 25 25 H 0.97000 * 120.00369 * 180.02562 * 8 7 5 26 26 H 1.07995 * 126.12648 * 359.95840 * 14 13 2 27 27 H 1.09000 * 109.46646 * 209.99544 * 16 15 14 28 28 H 1.09000 * 109.47248 * 330.00261 * 16 15 14 29 29 H 0.96701 * 113.99607 * 179.97438 * 17 16 15 30 30 H 1.07995 * 125.90192 * 179.74089 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0805 0.9746 -2.3756 7 6 1.9924 -0.4020 -3.7283 8 7 2.6749 -1.5195 -3.8513 9 14 1.4987 0.5631 -5.2496 10 1 0.7420 1.7745 -4.8433 11 1 2.7170 0.9671 -5.9965 12 1 0.6441 -0.2856 -6.1184 13 7 2.0183 -0.6905 1.1961 14 6 1.4403 -1.7559 1.7894 15 6 2.1969 -2.0929 2.8595 16 6 1.9268 -3.2270 3.8145 17 8 2.5700 -4.4120 3.3409 18 6 3.2708 -1.1993 2.9259 19 7 3.1682 -0.3620 1.9257 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1264 -0.7993 -1.2056 24 1 1.6055 -1.7197 -1.2952 25 1 2.9222 -1.8423 -4.7319 26 1 0.5357 -2.2506 1.4680 27 1 2.3153 -2.9721 4.8004 28 1 0.8524 -3.3985 3.8804 29 1 2.4388 -5.1841 3.9080 30 1 4.0518 -1.2021 3.6718 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703534130.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:48 Heat of formation + Delta-G solvation = -10.649998 kcal Electronic energy + Delta-G solvation = -13552.119415 eV Core-core repulsion = 11154.823055 eV Total energy + Delta-G solvation = -2397.296360 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.17009 -37.70618 -36.90716 -34.54108 -31.75446 -31.25985 -28.91706 -26.84089 -25.39933 -23.27479 -21.29742 -20.82710 -18.72030 -18.20404 -17.44418 -16.68332 -15.79065 -15.66819 -15.36336 -14.96971 -14.70776 -14.29194 -13.78582 -13.53773 -13.13052 -12.91071 -12.82232 -12.64206 -12.37089 -11.99958 -11.75040 -11.54114 -11.36598 -10.76084 -10.65019 -10.32504 -9.39325 -8.25797 -6.39207 1.02027 1.40393 1.41366 1.54508 1.67171 1.81637 2.39119 3.08670 3.63763 3.93621 3.98781 4.13186 4.19217 4.36567 4.40802 4.49817 4.77857 4.81439 4.91273 4.97536 5.19188 5.21977 5.32857 5.43469 5.66970 5.80020 6.00889 6.24870 6.75825 6.84201 7.11751 7.31131 8.87026 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.048978 B = 0.006894 C = 0.006603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.547918 B = 4060.318866 C = 4239.666761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.161 3.839 3 H 0.083 0.917 4 C 0.031 3.969 5 C -0.533 4.533 6 H 0.077 0.923 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.973 3.027 10 H -0.254 1.254 11 H -0.283 1.283 12 H -0.277 1.277 13 N -0.364 5.364 14 C 0.070 3.930 15 C -0.271 4.271 16 C 0.163 3.837 17 O -0.600 6.600 18 C 0.049 3.951 19 N -0.347 5.347 20 H 0.073 0.927 21 H 0.087 0.913 22 H 0.064 0.936 23 H -0.025 1.025 24 H -0.002 1.002 25 H 0.264 0.736 26 H 0.188 0.812 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.395 0.605 30 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 -1.668 13.890 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.101 0.899 4 C -0.007 4.007 5 C -0.572 4.572 6 H 0.095 0.905 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.797 3.203 10 H -0.177 1.177 11 H -0.209 1.209 12 H -0.203 1.203 13 N -0.144 5.144 14 C -0.079 4.079 15 C -0.283 4.283 16 C 0.085 3.915 17 O -0.409 6.409 18 C -0.136 4.136 19 N -0.168 5.168 20 H 0.092 0.908 21 H 0.106 0.894 22 H 0.083 0.917 23 H -0.007 1.007 24 H 0.016 0.984 25 H 0.073 0.927 26 H 0.205 0.795 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.245 0.755 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.079 -0.271 12.580 13.569 hybrid contribution -0.172 -0.890 -0.292 0.952 sum -5.251 -1.161 12.288 13.414 Atomic orbital electron populations 1.21979 0.90635 1.03351 1.03534 1.21535 0.96368 0.95836 0.80264 0.89888 1.19271 0.94086 0.95283 0.92045 1.21489 1.35705 1.09074 0.90897 0.90464 1.26053 0.94733 0.95987 1.03091 1.70143 1.39661 1.23039 1.24647 0.85280 0.78002 0.78892 0.78152 1.17698 1.20948 1.20254 1.49219 1.18448 1.24450 1.22302 1.22790 1.00674 0.90427 0.93990 1.20218 1.00251 1.04243 1.03553 1.20246 0.96581 0.81154 0.93522 1.86593 1.77435 1.21526 1.55297 1.24251 0.99116 0.93413 0.96858 1.77279 1.04493 1.26720 1.08336 0.90841 0.89407 0.91669 1.00654 0.98408 0.92699 0.79530 0.90639 0.91368 0.75468 0.77650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 8.64 71.98 0.62 -3.97 16 2 C 0.16 6.86 3.35 44.99 0.15 7.01 16 3 H 0.08 3.63 8.14 -2.38 -0.02 3.61 16 4 C 0.03 1.68 4.77 29.85 0.14 1.82 16 5 C -0.53 -29.36 8.41 25.60 0.22 -29.14 16 6 H 0.08 3.92 7.06 -2.91 -0.02 3.90 16 7 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 8 N -0.94 -57.51 13.29 21.45 0.28 -57.23 16 9 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 10 H -0.25 -10.48 7.11 99.48 0.71 -9.78 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 13 N -0.36 -14.96 3.53 -327.50 -1.15 -16.11 16 14 C 0.07 2.43 10.50 83.54 0.88 3.31 16 15 C -0.27 -8.53 5.73 -20.14 -0.12 -8.64 16 16 C 0.16 3.57 7.53 71.24 0.54 4.11 16 17 O -0.60 -14.82 13.64 -148.98 -2.03 -16.85 16 18 C 0.05 1.65 11.96 85.23 1.02 2.67 16 19 N -0.35 -14.53 12.58 -57.03 -0.72 -15.25 16 20 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 21 H 0.09 2.99 6.95 -2.39 -0.02 2.97 16 22 H 0.06 2.07 7.16 -2.38 -0.02 2.05 16 23 H -0.02 -1.57 8.14 -2.39 -0.02 -1.59 16 24 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.19 5.47 7.26 -2.91 -0.02 5.45 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.40 5.06 9.12 -74.06 -0.68 4.39 16 30 H 0.21 5.23 8.06 -2.91 -0.02 5.21 16 Total: -1.00 -73.46 263.00 2.78 -70.69 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.46 Total: 11.74 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 3.91 Total: -22.41 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -1.59 Total: -88.58 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -2.03 Total: -16.85 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -73.46 2.78 -70.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703534130.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.035 kcal (2) G-P(sol) polarization free energy of solvation -73.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds