Wall clock time and date at job start Mon Mar 30 2020 02:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46996 * 2 1 4 4 C 1.52993 * 109.47418 * 119.99948 * 2 1 3 5 5 C 1.50704 * 109.47177 * 295.00096 * 4 2 1 6 6 H 1.08001 * 119.99502 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99873 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99787 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00385 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46756 * 90.00329 * 9 7 5 11 11 H 1.48497 * 109.47528 * 210.00115 * 9 7 5 12 12 H 1.48496 * 109.47033 * 330.00610 * 9 7 5 13 13 N 1.46500 * 109.46978 * 240.00296 * 2 1 3 14 14 C 1.34954 * 126.03181 * 324.99179 * 13 2 1 15 15 C 1.35320 * 107.74052 * 180.02562 * 14 13 2 16 16 C 1.50706 * 126.03704 * 179.97438 * 15 14 13 17 17 O 1.42906 * 109.46702 * 90.00225 * 16 15 14 18 18 C 1.39869 * 107.92397 * 0.26955 * 15 14 13 19 19 N 1.30839 * 108.19682 * 359.54839 * 18 15 14 20 20 H 1.09006 * 109.46698 * 299.99852 * 1 2 3 21 21 H 1.08998 * 109.47410 * 60.00299 * 1 2 3 22 22 H 1.09003 * 109.46617 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47077 * 54.99896 * 4 2 1 24 24 H 1.09000 * 109.47396 * 174.99737 * 4 2 1 25 25 H 0.96997 * 120.00106 * 179.97438 * 8 7 5 26 26 H 1.07994 * 126.13197 * 0.02562 * 14 13 2 27 27 H 1.09000 * 109.47318 * 209.99804 * 16 15 14 28 28 H 1.09000 * 109.47161 * 330.00435 * 16 15 14 29 29 H 0.96698 * 113.99410 * 179.97438 * 17 16 15 30 30 H 1.07997 * 125.90256 * 179.74170 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 1 1.0807 0.9746 2.3756 7 6 1.9934 -0.4016 3.7282 8 7 1.6459 0.2778 4.7993 9 14 2.9638 -1.9882 3.9027 10 1 4.4173 -1.6846 3.8779 11 1 2.6166 -2.6418 5.1901 12 1 2.6292 -2.8993 2.7789 13 7 2.0183 -0.6906 -1.1962 14 6 1.4401 -1.7559 -1.7894 15 6 2.1967 -2.0929 -2.8596 16 6 1.9265 -3.2271 -3.8145 17 8 1.1124 -2.7590 -4.8918 18 6 3.2773 -1.2070 -2.9189 19 7 3.1681 -0.3621 -1.9259 20 1 -0.3633 0.5139 0.8901 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6054 -1.7198 1.2951 24 1 3.1264 -0.7994 1.2055 25 1 1.8932 -0.0450 5.6799 26 1 0.5358 -2.2509 -1.4678 27 1 2.8706 -3.6025 -4.2092 28 1 1.4078 -4.0289 -3.2890 29 1 0.8987 -3.4375 -5.5467 30 1 4.0642 -1.2165 -3.6586 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703534131.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:50 Heat of formation + Delta-G solvation = -6.975539 kcal Electronic energy + Delta-G solvation = -13589.399735 eV Core-core repulsion = 11192.262712 eV Total energy + Delta-G solvation = -2397.137024 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.19490 -37.71831 -36.93951 -34.55183 -31.76688 -31.49462 -29.31679 -26.83236 -25.11680 -23.10697 -21.32694 -20.79746 -19.16406 -18.18643 -17.43599 -16.64127 -15.77108 -15.72307 -15.36120 -15.01143 -14.78793 -14.61487 -13.92129 -13.58978 -13.20205 -13.02783 -12.82657 -12.61040 -12.13818 -12.04293 -11.80590 -11.57567 -11.46086 -10.83726 -10.76225 -10.35723 -9.41617 -8.34920 -6.39694 1.01464 1.30453 1.32284 1.42395 1.61434 1.81030 2.29426 2.99721 3.59990 3.89955 3.96464 4.08073 4.15907 4.30889 4.40115 4.47786 4.75108 4.77371 4.87580 4.90691 5.07202 5.16203 5.20610 5.32381 5.47063 5.78136 6.11829 6.22589 6.66057 6.82698 7.10232 7.24680 8.80433 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.045587 B = 0.007523 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.061123 B = 3720.947611 C = 3912.460849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.169 3.831 3 H 0.079 0.921 4 C -0.008 4.008 5 C -0.523 4.523 6 H 0.052 0.948 7 C 0.017 3.983 8 N -0.940 5.940 9 Si 0.940 3.060 10 H -0.276 1.276 11 H -0.277 1.277 12 H -0.253 1.253 13 N -0.366 5.366 14 C 0.071 3.929 15 C -0.268 4.268 16 C 0.163 3.837 17 O -0.595 6.595 18 C 0.051 3.949 19 N -0.345 5.345 20 H 0.078 0.922 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.028 0.972 24 H 0.005 0.995 25 H 0.269 0.731 26 H 0.191 0.809 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.396 0.604 30 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 -9.716 -16.339 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.068 3.932 3 H 0.097 0.903 4 C -0.046 4.046 5 C -0.562 4.562 6 H 0.070 0.930 7 C -0.181 4.181 8 N -0.580 5.580 9 Si 0.764 3.236 10 H -0.201 1.201 11 H -0.203 1.203 12 H -0.177 1.177 13 N -0.147 5.147 14 C -0.077 4.077 15 C -0.280 4.280 16 C 0.085 3.915 17 O -0.404 6.404 18 C -0.134 4.134 19 N -0.166 5.166 20 H 0.097 0.903 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.047 0.953 24 H 0.023 0.977 25 H 0.078 0.922 26 H 0.208 0.792 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.246 0.754 30 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.343 -8.055 -15.100 17.117 hybrid contribution 0.166 -1.366 0.065 1.377 sum -0.177 -9.420 -15.035 17.743 Atomic orbital electron populations 1.21985 0.91127 1.03673 1.02999 1.21271 0.96015 0.95809 0.80114 0.90258 1.19812 0.95775 0.96556 0.92476 1.21137 1.35679 1.09199 0.90149 0.93011 1.25772 0.96452 1.00366 0.95509 1.70012 1.48108 1.41098 0.98793 0.85822 0.79116 0.80413 0.78260 1.20125 1.20273 1.17656 1.49179 1.18869 1.24142 1.22504 1.22831 0.99704 0.90593 0.94620 1.20198 0.99683 1.06382 1.01767 1.20202 0.94656 0.91022 0.85631 1.86546 1.72821 1.42816 1.38170 1.24262 0.99640 0.92822 0.96720 1.77315 1.04522 1.25706 1.09066 0.90275 0.91438 0.90764 0.95329 0.97679 0.92241 0.79169 0.91044 0.91708 0.75449 0.77696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 8.64 71.98 0.62 -4.10 16 2 C 0.17 6.81 3.35 44.99 0.15 6.96 16 3 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 4 C -0.01 -0.37 3.84 29.85 0.11 -0.25 16 5 C -0.52 -28.92 8.96 25.60 0.23 -28.70 16 6 H 0.05 3.06 7.30 -2.91 -0.02 3.04 16 7 C 0.02 0.99 5.47 84.65 0.46 1.45 16 8 N -0.94 -57.24 13.96 21.45 0.30 -56.94 16 9 Si 0.94 44.10 27.47 68.60 1.88 45.99 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 13 N -0.37 -13.80 3.53 -327.50 -1.15 -14.96 16 14 C 0.07 2.21 10.50 83.54 0.88 3.08 16 15 C -0.27 -7.62 5.73 -20.14 -0.12 -7.74 16 16 C 0.16 3.17 7.53 71.24 0.54 3.71 16 17 O -0.59 -11.99 13.64 -148.98 -2.03 -14.03 16 18 C 0.05 1.57 11.96 85.24 1.02 2.59 16 19 N -0.35 -13.32 12.57 -57.02 -0.72 -14.03 16 20 H 0.08 2.93 6.95 -2.38 -0.02 2.91 16 21 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.07 2.22 7.16 -2.39 -0.02 2.20 16 23 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 24 H 0.00 0.24 7.57 -2.39 -0.02 0.23 16 25 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.19 4.82 7.26 -2.91 -0.02 4.80 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.40 3.57 9.12 -74.06 -0.68 2.90 16 30 H 0.21 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -70.05 259.40 2.58 -67.47 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.41 Total: 9.48 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 3.90 Total: -22.99 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -1.57 Total: -85.93 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -2.03 Total: -14.03 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Total: -70.05 2.58 -67.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703534131.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.491 kcal (2) G-P(sol) polarization free energy of solvation -70.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds