Wall clock time and date at job start Mon Mar 30 2020 02:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46509 * 109.47267 * 2 1 4 4 N 1.40081 * 126.03750 * 270.02417 * 3 2 1 5 5 C 1.30835 * 108.20095 * 179.69790 * 4 3 2 6 6 C 1.39865 * 108.20389 * 0.44207 * 5 4 3 7 7 C 1.50707 * 126.04309 * 179.81866 * 6 5 4 8 8 H 1.08999 * 109.47345 * 214.69135 * 7 6 5 9 9 O 1.42903 * 109.46442 * 334.69064 * 7 6 5 10 10 C 1.50696 * 109.47163 * 94.68683 * 7 6 5 11 11 H 1.07991 * 120.00427 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99614 * 180.02562 * 10 7 6 13 13 N 1.31510 * 120.00261 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 119.99746 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47404 * 90.00100 * 14 12 10 16 16 H 1.48506 * 109.47412 * 210.00385 * 14 12 10 17 17 H 1.48504 * 109.47304 * 330.00008 * 14 12 10 18 18 C 1.34944 * 126.03245 * 90.00252 * 3 2 1 19 19 C 1.50702 * 126.13093 * 0.04276 * 18 3 2 20 20 H 1.09003 * 109.46860 * 300.00255 * 1 2 3 21 21 H 1.09008 * 109.46925 * 59.99453 * 1 2 3 22 22 H 1.08986 * 109.47392 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47019 * 240.00679 * 2 1 3 24 24 H 1.08998 * 109.47399 * 120.00411 * 2 1 3 25 25 H 1.08007 * 125.89811 * 180.25800 * 5 4 3 26 26 H 0.96700 * 114.00311 * 60.00230 * 9 7 6 27 27 H 0.97001 * 120.00070 * 180.02562 * 13 12 10 28 28 H 1.09002 * 109.47086 * 269.97773 * 19 18 3 29 29 H 1.09003 * 109.47025 * 29.97220 * 19 18 3 30 30 H 1.08998 * 109.47626 * 149.97391 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2927 2.1584 -1.1327 5 6 2.7018 3.3348 -0.7320 6 6 2.7109 3.3411 0.6666 7 6 3.1189 4.4954 1.5455 8 1 3.6097 4.1144 2.4411 9 8 4.0216 5.3420 0.8311 10 6 1.8963 5.2835 1.9393 11 1 0.9214 4.9789 1.5887 12 6 2.0225 6.3936 2.7473 13 7 3.2098 6.7649 3.1739 14 14 0.5070 7.3701 3.2361 15 1 -0.0494 6.8216 4.4990 16 1 0.8787 8.7939 3.4362 17 1 -0.5134 7.2713 2.1617 18 6 2.2830 2.1297 1.0913 19 6 2.1301 1.6941 2.5259 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 -1.0275 -0.0005 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.9865 4.1578 -1.3709 26 1 3.6509 5.7175 0.0207 27 1 3.2985 7.5456 3.7426 28 1 1.1242 1.9315 2.8723 29 1 2.2952 0.6192 2.5988 30 1 2.8601 2.2166 3.1441 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703741710.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:29 Heat of formation + Delta-G solvation = 16.665249 kcal Electronic energy + Delta-G solvation = -13993.829027 eV Core-core repulsion = 11597.717144 eV Total energy + Delta-G solvation = -2396.111882 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.59104 -35.62562 -33.92292 -32.09689 -31.66132 -29.19317 -27.16218 -25.64152 -23.50561 -22.36418 -19.70014 -18.70517 -16.89423 -16.11041 -14.80935 -14.70133 -14.47587 -14.10286 -13.41119 -13.17098 -12.75116 -12.64538 -12.15175 -12.05658 -11.78513 -11.42206 -11.20794 -11.08890 -10.91568 -10.86287 -10.19860 -10.00489 -9.11086 -8.59369 -8.56674 -8.26257 -7.32932 -5.94209 -4.12068 2.53450 3.07125 3.30062 3.37424 3.40550 3.67370 4.45444 4.78559 5.11226 5.22658 5.29537 5.35439 5.53637 5.60915 5.64958 5.88338 6.03102 6.11053 6.31918 6.41746 6.55066 6.58726 6.97741 7.40125 7.74491 7.80991 7.91516 8.26604 8.42687 8.91455 9.44156 9.64546 11.08365 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.037587 B = 0.009535 C = 0.008671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.762246 B = 2935.776710 C = 3228.211659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.134 3.866 3 N -0.383 5.383 4 N -0.317 5.317 5 C 0.051 3.949 6 C -0.216 4.216 7 C 0.295 3.705 8 H 0.061 0.939 9 O -0.562 6.562 10 C -0.555 4.555 11 H 0.054 0.946 12 C 0.078 3.922 13 N -0.862 5.862 14 Si 0.887 3.113 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.065 3.935 19 C -0.079 4.079 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.175 0.825 26 H 0.345 0.655 27 H 0.260 0.740 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 -10.929 -2.969 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.012 3.988 3 N -0.169 5.169 4 N -0.138 5.138 5 C -0.134 4.134 6 C -0.227 4.227 7 C 0.237 3.763 8 H 0.078 0.922 9 O -0.364 6.364 10 C -0.593 4.593 11 H 0.072 0.928 12 C -0.128 4.128 13 N -0.498 5.498 14 Si 0.714 3.286 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.060 4.060 19 C -0.138 4.138 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.192 0.808 26 H 0.189 0.811 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.406 -11.844 -3.358 12.774 hybrid contribution -1.195 1.221 0.505 1.782 sum -4.601 -10.623 -2.853 11.923 Atomic orbital electron populations 1.22178 0.95013 1.02222 1.03288 1.21422 0.94742 0.79271 1.03360 1.48420 1.53435 1.11449 1.03595 1.77136 1.23814 1.04641 1.08211 1.23537 0.99486 0.95160 0.95199 1.21454 1.09215 0.97444 0.94587 1.17778 0.88530 0.82499 0.87500 0.92168 1.86565 1.43262 1.66814 1.39750 1.21599 0.93561 1.12089 1.32035 0.92793 1.25048 0.95480 0.97100 0.95135 1.70071 1.21815 1.25023 1.32923 0.86705 0.83530 0.79435 0.78897 1.20641 1.21154 1.19914 1.20676 1.02709 0.92422 0.90164 1.20311 1.03757 0.99878 0.89838 0.91959 0.91874 0.91197 0.89597 0.89675 0.80822 0.81137 0.93032 0.90662 0.92707 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 2 C 0.13 1.72 6.96 -4.04 -0.03 1.70 16 3 N -0.38 -6.93 3.61 -57.14 -0.21 -7.14 16 4 N -0.32 -6.37 12.58 30.62 0.39 -5.98 16 5 C 0.05 1.07 11.33 -17.37 -0.20 0.87 16 6 C -0.22 -4.84 5.16 -105.05 -0.54 -5.39 16 7 C 0.30 7.59 3.03 -29.03 -0.09 7.51 16 8 H 0.06 1.67 7.31 -51.93 -0.38 1.29 16 9 O -0.56 -14.65 12.53 -35.23 -0.44 -15.09 16 10 C -0.55 -15.22 8.75 -34.44 -0.30 -15.53 16 11 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 13 N -0.86 -25.28 12.84 55.43 0.71 -24.57 16 14 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 18 C 0.06 1.28 6.93 -82.26 -0.57 0.71 16 19 C -0.08 -1.29 9.90 36.01 0.36 -0.94 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 21 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 22 H 0.07 0.59 8.14 -51.94 -0.42 0.17 16 23 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.09 0.90 7.05 -51.93 -0.37 0.54 16 25 H 0.17 3.18 7.51 -52.48 -0.39 2.78 16 26 H 0.34 7.90 8.14 45.56 0.37 8.27 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.70 7.08 -51.93 -0.37 0.33 16 30 H 0.09 1.50 7.25 -51.93 -0.38 1.13 16 LS Contribution 261.21 15.07 3.94 3.94 Total: -1.00 -32.45 261.21 -4.89 -37.34 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -3.17 Total: 5.86 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -1.09 Total: -10.55 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.89 Total: -37.69 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.44 Total: -15.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.45 -4.89 -37.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703741710.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.009 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds