Wall clock time and date at job start Mon Mar 30 2020 02:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46509 * 109.47267 * 2 1 4 4 N 1.40081 * 126.03750 * 270.02417 * 3 2 1 5 5 C 1.30835 * 108.20095 * 179.69790 * 4 3 2 6 6 C 1.39865 * 108.20389 * 0.44207 * 5 4 3 7 7 C 1.50707 * 126.04309 * 179.81866 * 6 5 4 8 8 H 1.08999 * 109.47345 * 214.69135 * 7 6 5 9 9 O 1.42903 * 109.46442 * 334.69064 * 7 6 5 10 10 C 1.50696 * 109.47163 * 94.68683 * 7 6 5 11 11 H 1.07991 * 120.00427 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99614 * 180.02562 * 10 7 6 13 13 N 1.31510 * 120.00261 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 119.99746 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47404 * 90.00100 * 14 12 10 16 16 H 1.48506 * 109.47412 * 210.00385 * 14 12 10 17 17 H 1.48504 * 109.47304 * 330.00008 * 14 12 10 18 18 C 1.34944 * 126.03245 * 90.00252 * 3 2 1 19 19 C 1.50702 * 126.13093 * 0.04276 * 18 3 2 20 20 H 1.09003 * 109.46860 * 300.00255 * 1 2 3 21 21 H 1.09008 * 109.46925 * 59.99453 * 1 2 3 22 22 H 1.08986 * 109.47392 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47019 * 240.00679 * 2 1 3 24 24 H 1.08998 * 109.47399 * 120.00411 * 2 1 3 25 25 H 1.08007 * 125.89811 * 180.25800 * 5 4 3 26 26 H 0.96700 * 114.00311 * 60.00230 * 9 7 6 27 27 H 0.97001 * 120.00070 * 180.02562 * 13 12 10 28 28 H 1.09002 * 109.47086 * 269.97773 * 19 18 3 29 29 H 1.09003 * 109.47025 * 29.97220 * 19 18 3 30 30 H 1.08998 * 109.47626 * 149.97391 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2927 2.1584 -1.1327 5 6 2.7018 3.3348 -0.7320 6 6 2.7109 3.3411 0.6666 7 6 3.1189 4.4954 1.5455 8 1 3.6097 4.1144 2.4411 9 8 4.0216 5.3420 0.8311 10 6 1.8963 5.2835 1.9393 11 1 0.9214 4.9789 1.5887 12 6 2.0225 6.3936 2.7473 13 7 3.2098 6.7649 3.1739 14 14 0.5070 7.3701 3.2361 15 1 -0.0494 6.8216 4.4990 16 1 0.8787 8.7939 3.4362 17 1 -0.5134 7.2713 2.1617 18 6 2.2830 2.1297 1.0913 19 6 2.1301 1.6941 2.5259 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 -1.0275 -0.0005 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.9865 4.1578 -1.3709 26 1 3.6509 5.7175 0.0207 27 1 3.2985 7.5456 3.7426 28 1 1.1242 1.9315 2.8723 29 1 2.2952 0.6192 2.5988 30 1 2.8601 2.2166 3.1441 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703741710.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:29 Heat of formation + Delta-G solvation = -6.903018 kcal Electronic energy + Delta-G solvation = -13994.851023 eV Core-core repulsion = 11597.717144 eV Total energy + Delta-G solvation = -2397.133879 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.10814 -37.54956 -35.20608 -34.20706 -33.16640 -30.64104 -28.82485 -27.38384 -24.82486 -24.13443 -21.18184 -20.23319 -18.98996 -17.59891 -16.63819 -16.30090 -16.06262 -15.48855 -15.17888 -14.70984 -14.41060 -13.85468 -13.61402 -13.35731 -13.15760 -13.03396 -12.85308 -12.79362 -12.67545 -12.19816 -12.07342 -11.63521 -11.08670 -10.69626 -10.27155 -10.02298 -9.00290 -8.04716 -6.31435 1.02236 1.41524 1.43047 1.53376 1.76315 2.01271 2.45653 3.17038 3.69785 3.94170 4.14951 4.20555 4.27043 4.36554 4.48894 4.70002 4.77483 4.81375 4.87327 4.98892 5.10314 5.23814 5.34930 5.69610 5.78426 5.91005 6.17171 6.34832 6.77537 6.88423 7.38763 7.60311 8.96465 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.037587 B = 0.009535 C = 0.008671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.762246 B = 2935.776710 C = 3228.211659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.120 3.880 3 N -0.374 5.374 4 N -0.328 5.328 5 C 0.041 3.959 6 C -0.258 4.258 7 C 0.303 3.697 8 H 0.030 0.970 9 O -0.578 6.578 10 C -0.561 4.561 11 H 0.046 0.954 12 C 0.029 3.971 13 N -0.899 5.899 14 Si 0.954 3.046 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.072 3.928 19 C -0.078 4.078 20 H 0.052 0.948 21 H 0.043 0.957 22 H 0.107 0.893 23 H 0.100 0.900 24 H 0.116 0.884 25 H 0.187 0.813 26 H 0.356 0.644 27 H 0.261 0.739 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 -12.501 -2.895 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.000 4.000 3 N -0.159 5.159 4 N -0.150 5.150 5 C -0.143 4.143 6 C -0.269 4.269 7 C 0.244 3.756 8 H 0.047 0.953 9 O -0.382 6.382 10 C -0.599 4.599 11 H 0.065 0.935 12 C -0.173 4.173 13 N -0.537 5.537 14 Si 0.779 3.221 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.196 1.196 18 C -0.055 4.055 19 C -0.136 4.136 20 H 0.071 0.929 21 H 0.062 0.938 22 H 0.126 0.874 23 H 0.118 0.882 24 H 0.134 0.866 25 H 0.204 0.796 26 H 0.201 0.799 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.821 -13.447 -3.308 14.663 hybrid contribution -0.756 1.587 0.456 1.816 sum -5.577 -11.860 -2.853 13.412 Atomic orbital electron populations 1.22139 0.93746 1.04251 1.01861 1.21980 0.95771 0.76635 1.05624 1.48839 1.51867 1.12774 1.02467 1.77075 1.24090 1.04559 1.09317 1.23726 0.99803 0.95988 0.94800 1.21194 1.12693 0.97928 0.95094 1.17443 0.87389 0.83434 0.87311 0.95254 1.86490 1.43865 1.67387 1.40481 1.21806 0.93791 1.12436 1.31848 0.93532 1.25826 0.98315 0.98138 0.95059 1.70196 1.23987 1.25680 1.33839 0.85643 0.79812 0.77869 0.78741 1.19619 1.20832 1.19600 1.21077 1.00674 0.91835 0.91918 1.20395 1.03539 1.02352 0.87338 0.92854 0.93779 0.87436 0.88179 0.86633 0.79635 0.79863 0.92948 0.90066 0.88508 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.24 71.98 0.74 -2.45 16 2 C 0.12 2.66 6.96 86.38 0.60 3.26 16 3 N -0.37 -12.80 3.61 -334.68 -1.21 -14.01 16 4 N -0.33 -12.89 12.58 -57.02 -0.72 -13.60 16 5 C 0.04 1.71 11.33 85.24 0.97 2.68 16 6 C -0.26 -11.65 5.16 -20.14 -0.10 -11.76 16 7 C 0.30 15.98 3.03 29.10 0.09 16.07 16 8 H 0.03 1.71 7.31 -2.39 -0.02 1.69 16 9 O -0.58 -31.02 12.53 -148.98 -1.87 -32.89 16 10 C -0.56 -31.20 8.75 25.60 0.22 -30.98 16 11 H 0.05 2.61 7.74 -2.92 -0.02 2.58 16 12 C 0.03 1.61 5.40 84.66 0.46 2.06 16 13 N -0.90 -53.57 12.84 21.45 0.28 -53.30 16 14 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 18 C 0.07 2.76 6.93 41.41 0.29 3.04 16 19 C -0.08 -2.40 9.90 71.24 0.71 -1.70 16 20 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 21 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 22 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.12 1.90 7.05 -2.39 -0.02 1.88 16 25 H 0.19 6.87 7.51 -2.91 -0.02 6.85 16 26 H 0.36 16.79 8.14 -74.06 -0.60 16.19 16 27 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.10 2.12 7.08 -2.39 -0.02 2.10 16 30 H 0.07 2.42 7.25 -2.39 -0.02 2.41 16 Total: -1.00 -70.10 261.21 3.01 -67.09 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.54 Total: 20.85 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 3.96 Total: -19.78 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.65 Total: -80.91 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.87 Total: -32.89 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.10 3.01 -67.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703741710.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.186 kcal (2) G-P(sol) polarization free energy of solvation -70.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds