Wall clock time and date at job start Mon Mar 30 2020 02:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36235 * 116.99871 * 2 1 4 4 C 1.40115 * 126.04897 * 0.02562 * 3 2 1 5 5 N 1.30866 * 108.35590 * 179.97438 * 4 3 2 6 6 N 1.40087 * 108.32280 * 0.02562 * 5 4 3 7 7 C 1.46494 * 126.07739 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47643 * 334.97145 * 7 6 5 9 9 C 1.53008 * 109.47168 * 214.97404 * 7 6 5 10 10 C 1.53001 * 109.47588 * 94.97376 * 7 6 5 11 11 C 1.50693 * 109.47291 * 184.99695 * 10 7 6 12 12 H 1.07996 * 120.00348 * 0.02562 * 11 10 7 13 13 C 1.37879 * 119.99714 * 179.97438 * 11 10 7 14 14 N 1.31513 * 120.00345 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99972 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46731 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46920 * 120.00451 * 15 13 11 18 18 H 1.48501 * 109.47020 * 240.00351 * 15 13 11 19 19 C 1.35582 * 126.05053 * 179.71681 * 3 2 1 20 20 H 1.08993 * 109.47230 * 299.99954 * 1 2 3 21 21 H 1.08995 * 109.47007 * 60.00412 * 1 2 3 22 22 H 1.09007 * 109.46630 * 179.97438 * 1 2 3 23 23 H 1.07998 * 125.82310 * 359.97438 * 4 3 2 24 24 H 1.08996 * 109.47004 * 59.99825 * 9 7 6 25 25 H 1.08994 * 109.47069 * 180.02562 * 9 7 6 26 26 H 1.09000 * 109.46627 * 300.00363 * 9 7 6 27 27 H 1.09002 * 109.46896 * 305.00302 * 10 7 6 28 28 H 1.09005 * 109.46838 * 64.99519 * 10 7 6 29 29 H 0.96997 * 120.00490 * 179.97438 * 14 13 11 30 30 H 1.07998 * 126.21628 * 359.95930 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2139 0.0000 4 6 1.4124 2.4628 0.0005 5 7 2.3328 3.3932 0.0009 6 7 3.5879 2.7710 0.0000 7 6 4.8867 3.4486 0.0006 8 1 4.7781 4.4427 -0.4330 9 6 5.8855 2.6375 -0.8273 10 6 5.3969 3.5721 1.4378 11 6 6.6715 4.3760 1.4510 12 1 7.0769 4.7608 0.5269 13 6 7.3195 4.6211 2.6430 14 7 6.8257 4.1530 3.7684 15 14 8.8992 5.6183 2.6595 16 1 9.2409 6.0270 1.2734 17 1 8.7120 6.8281 3.5000 18 1 9.9998 4.7927 3.2184 19 6 3.3864 1.4272 0.0054 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 0.3453 2.6294 0.0006 24 1 5.5221 2.5495 -1.8511 25 1 6.8520 3.1414 -0.8264 26 1 5.9941 1.6434 -0.3936 27 1 4.6453 4.0724 2.0484 28 1 5.5900 2.5781 1.8414 29 1 7.2818 4.3252 4.6070 30 1 4.1536 0.6671 0.0111 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709979577.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:52 Heat of formation + Delta-G solvation = 30.904033 kcal Electronic energy + Delta-G solvation = -13587.990587 eV Core-core repulsion = 11192.496145 eV Total energy + Delta-G solvation = -2395.494442 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.81916 -37.74675 -35.16220 -32.47509 -29.89219 -28.93487 -27.10682 -26.58030 -23.97068 -21.88143 -20.47289 -19.34929 -17.56475 -16.41418 -15.52556 -15.06536 -14.83059 -14.60343 -14.15295 -13.88947 -13.22734 -12.39508 -12.32469 -12.00151 -11.79468 -11.47371 -11.09608 -11.01776 -10.93918 -10.56834 -10.32288 -10.04510 -9.87217 -9.30947 -8.79782 -8.47997 -7.42035 -6.11595 -4.16478 2.36764 2.95678 3.18255 3.25482 3.33543 3.36508 3.78189 4.37290 5.11135 5.18681 5.24579 5.31797 5.36725 5.53946 5.60076 5.74815 5.92998 5.97326 6.18079 6.38831 6.58338 6.61686 6.74484 7.39263 7.51468 7.59641 7.76678 7.87611 8.17070 8.21066 8.88632 9.48198 10.99706 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.061861 B = 0.006556 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.518246 B = 4270.105431 C = 4381.676764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.311 6.311 3 C -0.054 4.054 4 C -0.023 4.023 5 N -0.274 5.274 6 N -0.335 5.335 7 C 0.157 3.843 8 H 0.093 0.907 9 C -0.149 4.149 10 C 0.018 3.982 11 C -0.523 4.523 12 H 0.062 0.938 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.896 3.104 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.033 3.967 20 H 0.047 0.953 21 H 0.046 0.954 22 H 0.091 0.909 23 H 0.175 0.825 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.262 0.738 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.974 -6.025 -7.721 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C -0.108 4.108 4 C -0.207 4.207 5 N -0.099 5.099 6 N -0.122 5.122 7 C 0.058 3.942 8 H 0.111 0.889 9 C -0.207 4.207 10 C -0.020 4.020 11 C -0.561 4.561 12 H 0.080 0.920 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.114 4.114 20 H 0.066 0.934 21 H 0.064 0.936 22 H 0.109 0.891 23 H 0.192 0.808 24 H 0.064 0.936 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.514 -4.926 -7.541 11.730 hybrid contribution 0.352 -0.246 0.280 0.512 sum -7.163 -5.172 -7.261 11.436 Atomic orbital electron populations 1.22834 0.79412 1.02863 1.00688 1.85942 1.20068 1.24584 1.91814 1.18589 0.91560 0.85089 1.15609 1.23792 0.99597 0.90236 1.07098 1.77239 0.88569 1.21961 1.22143 1.49198 1.06000 1.03213 1.53790 1.21864 0.75446 0.95283 1.01611 0.88857 1.22078 1.00092 1.00781 0.97736 1.19524 0.96488 0.98253 0.87774 1.21059 1.07578 1.33975 0.93515 0.92005 1.25007 0.97861 0.95797 0.95512 1.69981 1.39561 1.45152 0.98131 0.86469 0.83025 0.79885 0.78236 1.19565 1.20917 1.20908 1.21477 0.95273 0.87626 1.06978 0.93417 0.93561 0.89068 0.80758 0.93619 0.89134 0.92262 0.95626 0.95772 0.92792 0.80821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.15 101.05 1.03 1.43 16 2 O -0.31 -4.83 10.59 -20.49 -0.22 -5.04 16 3 C -0.05 -0.94 6.96 -39.83 -0.28 -1.22 16 4 C -0.02 -0.39 11.07 -17.26 -0.19 -0.58 16 5 N -0.27 -5.56 12.57 30.68 0.39 -5.17 16 6 N -0.34 -6.77 3.55 -54.55 -0.19 -6.96 16 7 C 0.16 3.25 3.35 -67.93 -0.23 3.03 16 8 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 9 C -0.15 -2.58 8.66 37.16 0.32 -2.26 16 10 C 0.02 0.45 4.77 -27.89 -0.13 0.31 16 11 C -0.52 -13.99 8.41 -34.44 -0.29 -14.28 16 12 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 15 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.03 0.61 10.65 -16.71 -0.18 0.43 16 20 H 0.05 0.48 8.10 -51.93 -0.42 0.06 16 21 H 0.05 0.43 8.10 -51.93 -0.42 0.01 16 22 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 23 H 0.18 2.31 7.69 -52.49 -0.40 1.90 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 1.60 6.95 -51.93 -0.36 1.23 16 26 H 0.06 0.98 7.18 -51.93 -0.37 0.61 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.17 2.79 7.29 -52.49 -0.38 2.41 16 LS Contribution 261.72 15.07 3.94 3.94 Total: -1.00 -31.13 261.72 -4.39 -35.52 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.98 Total: -1.09 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -0.05 Total: -11.56 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.93 Total: -37.69 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.22 Total: -5.04 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.13 -4.39 -35.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979577.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.422 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds