Wall clock time and date at job start Mon Mar 30 2020 02:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36235 * 116.99871 * 2 1 4 4 C 1.40115 * 126.04897 * 0.02562 * 3 2 1 5 5 N 1.30866 * 108.35590 * 179.97438 * 4 3 2 6 6 N 1.40087 * 108.32280 * 0.02562 * 5 4 3 7 7 C 1.46494 * 126.07739 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47643 * 334.97145 * 7 6 5 9 9 C 1.53008 * 109.47168 * 214.97404 * 7 6 5 10 10 C 1.53001 * 109.47588 * 94.97376 * 7 6 5 11 11 C 1.50693 * 109.47291 * 184.99695 * 10 7 6 12 12 H 1.07996 * 120.00348 * 0.02562 * 11 10 7 13 13 C 1.37879 * 119.99714 * 179.97438 * 11 10 7 14 14 N 1.31513 * 120.00345 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99972 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46731 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46920 * 120.00451 * 15 13 11 18 18 H 1.48501 * 109.47020 * 240.00351 * 15 13 11 19 19 C 1.35582 * 126.05053 * 179.71681 * 3 2 1 20 20 H 1.08993 * 109.47230 * 299.99954 * 1 2 3 21 21 H 1.08995 * 109.47007 * 60.00412 * 1 2 3 22 22 H 1.09007 * 109.46630 * 179.97438 * 1 2 3 23 23 H 1.07998 * 125.82310 * 359.97438 * 4 3 2 24 24 H 1.08996 * 109.47004 * 59.99825 * 9 7 6 25 25 H 1.08994 * 109.47069 * 180.02562 * 9 7 6 26 26 H 1.09000 * 109.46627 * 300.00363 * 9 7 6 27 27 H 1.09002 * 109.46896 * 305.00302 * 10 7 6 28 28 H 1.09005 * 109.46838 * 64.99519 * 10 7 6 29 29 H 0.96997 * 120.00490 * 179.97438 * 14 13 11 30 30 H 1.07998 * 126.21628 * 359.95930 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2139 0.0000 4 6 1.4124 2.4628 0.0005 5 7 2.3328 3.3932 0.0009 6 7 3.5879 2.7710 0.0000 7 6 4.8867 3.4486 0.0006 8 1 4.7781 4.4427 -0.4330 9 6 5.8855 2.6375 -0.8273 10 6 5.3969 3.5721 1.4378 11 6 6.6715 4.3760 1.4510 12 1 7.0769 4.7608 0.5269 13 6 7.3195 4.6211 2.6430 14 7 6.8257 4.1530 3.7684 15 14 8.8992 5.6183 2.6595 16 1 9.2409 6.0270 1.2734 17 1 8.7120 6.8281 3.5000 18 1 9.9998 4.7927 3.2184 19 6 3.3864 1.4272 0.0054 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 0.3453 2.6294 0.0006 24 1 5.5221 2.5495 -1.8511 25 1 6.8520 3.1414 -0.8264 26 1 5.9941 1.6434 -0.3936 27 1 4.6453 4.0724 2.0484 28 1 5.5900 2.5781 1.8414 29 1 7.2818 4.3252 4.6070 30 1 4.1536 0.6671 0.0111 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709979577.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:52 Heat of formation + Delta-G solvation = 10.184886 kcal Electronic energy + Delta-G solvation = -13588.889037 eV Core-core repulsion = 11192.496145 eV Total energy + Delta-G solvation = -2396.392892 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.21960 -38.96449 -36.85724 -34.45769 -31.38664 -30.36965 -28.86271 -27.60012 -25.78379 -23.55736 -21.80950 -20.89083 -19.03314 -18.34307 -16.84314 -16.53568 -16.34722 -15.90811 -15.66809 -15.35096 -14.81770 -14.24443 -13.76765 -13.50472 -13.14773 -12.84876 -12.83315 -12.63922 -12.37193 -12.11431 -11.99689 -11.61311 -11.52241 -11.34846 -10.62105 -10.33567 -8.78904 -8.23260 -6.35950 0.92556 1.42009 1.42948 1.52918 1.57434 1.84360 2.40992 2.64254 3.11579 3.79743 3.88223 4.15234 4.20518 4.40094 4.42826 4.54377 4.64221 4.81595 4.82569 4.89724 4.99342 5.23733 5.29445 5.36427 5.53924 5.70403 5.99193 6.20945 6.57273 6.75572 6.79121 7.34156 8.89441 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.061861 B = 0.006556 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.518246 B = 4270.105431 C = 4381.676764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.325 6.325 3 C -0.050 4.050 4 C -0.011 4.011 5 N -0.315 5.315 6 N -0.355 5.355 7 C 0.168 3.832 8 H 0.088 0.912 9 C -0.138 4.138 10 C 0.029 3.971 11 C -0.531 4.531 12 H 0.077 0.923 13 C 0.001 3.999 14 N -0.936 5.936 15 Si 0.970 3.030 16 H -0.254 1.254 17 H -0.284 1.284 18 H -0.278 1.278 19 C 0.017 3.983 20 H 0.054 0.946 21 H 0.061 0.939 22 H 0.118 0.882 23 H 0.212 0.788 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.063 0.937 27 H -0.020 1.020 28 H 0.000 1.000 29 H 0.264 0.736 30 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.078 -6.393 -9.074 13.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.238 6.238 3 C -0.105 4.105 4 C -0.196 4.196 5 N -0.139 5.139 6 N -0.142 5.142 7 C 0.067 3.933 8 H 0.106 0.894 9 C -0.196 4.196 10 C -0.009 4.009 11 C -0.570 4.570 12 H 0.096 0.904 13 C -0.197 4.197 14 N -0.576 5.576 15 Si 0.795 3.205 16 H -0.177 1.177 17 H -0.210 1.210 18 H -0.204 1.204 19 C -0.128 4.128 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.136 0.864 23 H 0.229 0.771 24 H 0.090 0.910 25 H 0.107 0.893 26 H 0.082 0.918 27 H -0.002 1.002 28 H 0.018 0.982 29 H 0.073 0.927 30 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.635 -5.307 -8.917 12.883 hybrid contribution 0.201 -0.225 0.717 0.778 sum -7.434 -5.532 -8.201 12.374 Atomic orbital electron populations 1.23206 0.76750 1.05113 1.01739 1.85944 1.22788 1.23474 1.91605 1.18691 0.91434 0.85948 1.14399 1.24403 1.00850 0.89622 1.04710 1.77186 0.89192 1.23610 1.23932 1.49038 1.05689 1.03837 1.55591 1.21541 0.76809 0.96232 0.98684 0.89397 1.21990 0.98867 1.00266 0.98513 1.19309 0.95246 0.96031 0.90356 1.21495 1.07817 1.33519 0.94138 0.90450 1.26008 1.01640 0.96977 0.95088 1.70133 1.41504 1.46986 0.98939 0.85315 0.78365 0.77898 0.78969 1.17713 1.20992 1.20416 1.21883 0.96592 0.87250 1.07105 0.92735 0.92044 0.86393 0.77132 0.91011 0.89315 0.91767 1.00181 0.98213 0.92742 0.79282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.15 113.37 1.15 1.64 16 2 O -0.32 -9.38 10.59 -96.23 -1.02 -10.40 16 3 C -0.05 -1.68 6.96 22.11 0.15 -1.53 16 4 C -0.01 -0.36 11.07 85.29 0.94 0.59 16 5 N -0.32 -12.71 12.57 -56.85 -0.71 -13.42 16 6 N -0.35 -14.35 3.55 -326.51 -1.16 -15.51 16 7 C 0.17 6.99 3.35 45.00 0.15 7.14 16 8 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 9 C -0.14 -4.64 8.66 71.98 0.62 -4.01 16 10 C 0.03 1.51 4.77 29.85 0.14 1.65 16 11 C -0.53 -28.72 8.41 25.60 0.22 -28.50 16 12 H 0.08 3.85 7.06 -2.91 -0.02 3.83 16 13 C 0.00 0.05 5.46 84.66 0.46 0.51 16 14 N -0.94 -56.73 13.29 21.45 0.28 -56.44 16 15 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 16 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 19 C 0.02 0.62 10.65 83.45 0.89 1.50 16 20 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 21 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 22 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 23 H 0.21 4.98 7.69 -2.91 -0.02 4.95 16 24 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.09 3.00 6.95 -2.39 -0.02 2.98 16 26 H 0.06 2.07 7.18 -2.39 -0.02 2.05 16 27 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 28 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 29 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.19 5.95 7.29 -2.91 -0.02 5.93 16 Total: -1.00 -68.21 261.72 5.27 -62.94 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.12 Total: 8.92 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 4.73 Total: -21.01 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -1.59 Total: -85.38 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.02 Total: -10.40 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -68.21 5.27 -62.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979577.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.125 kcal (2) G-P(sol) polarization free energy of solvation -68.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds