Wall clock time and date at job start Mon Mar 30 2020 02:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36222 * 117.00357 * 2 1 4 4 C 1.40121 * 126.04755 * 0.02562 * 3 2 1 5 5 N 1.30869 * 108.35523 * 179.71599 * 4 3 2 6 6 N 1.40082 * 108.32056 * 0.44076 * 5 4 3 7 7 C 1.46504 * 126.07873 * 179.81731 * 6 5 4 8 8 H 1.09002 * 109.46865 * 24.68836 * 7 6 5 9 9 C 1.53002 * 109.47132 * 144.69181 * 7 6 5 10 10 C 1.53002 * 109.47165 * 264.68964 * 7 6 5 11 11 C 1.50696 * 109.46919 * 174.99802 * 10 7 6 12 12 H 1.07999 * 120.00202 * 359.97438 * 11 10 7 13 13 C 1.37884 * 119.99746 * 180.02562 * 11 10 7 14 14 N 1.31514 * 119.99573 * 0.27650 * 13 11 10 15 15 Si 1.86800 * 119.99781 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47364 * 359.97438 * 15 13 11 17 17 H 1.48508 * 109.46883 * 120.00040 * 15 13 11 18 18 H 1.48497 * 109.46870 * 239.99850 * 15 13 11 19 19 C 1.35586 * 126.05362 * 179.97438 * 3 2 1 20 20 H 1.08996 * 109.47073 * 179.97438 * 1 2 3 21 21 H 1.08991 * 109.46952 * 300.00202 * 1 2 3 22 22 H 1.09002 * 109.46815 * 59.99888 * 1 2 3 23 23 H 1.07989 * 125.82444 * 0.02562 * 4 3 2 24 24 H 1.09001 * 109.46743 * 299.99875 * 9 7 6 25 25 H 1.08994 * 109.47199 * 60.00032 * 9 7 6 26 26 H 1.09000 * 109.47048 * 180.02562 * 9 7 6 27 27 H 1.09000 * 109.46497 * 55.00067 * 10 7 6 28 28 H 1.08999 * 109.46623 * 295.00131 * 10 7 6 29 29 H 0.97001 * 120.00651 * 359.71956 * 14 13 11 30 30 H 1.07996 * 126.21325 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0476 1.2137 0.0000 4 6 1.4125 2.4628 0.0005 5 7 2.3330 3.3930 0.0065 6 7 3.5880 2.7708 -0.0002 7 6 4.8869 3.4483 -0.0006 8 1 4.7784 4.4421 0.4340 9 6 5.8859 2.6363 0.8263 10 6 5.3968 3.5730 -1.4377 11 6 6.6713 4.3769 -1.4506 12 1 7.0770 4.7608 -0.5262 13 6 7.3191 4.6231 -2.6426 14 7 6.8216 4.1610 -3.7689 15 14 8.8987 5.6202 -2.6586 16 1 9.2410 6.0277 -1.2722 17 1 9.9992 4.7951 -3.2186 18 1 8.7113 6.8308 -3.4979 19 6 3.3865 1.4270 0.0005 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 0.3456 2.6294 0.0014 24 1 5.5227 2.5475 1.8501 25 1 5.9944 1.6427 0.3917 26 1 6.8522 3.1407 0.8264 27 1 4.6450 4.0740 -2.0476 28 1 5.5897 2.5794 -1.8422 29 1 6.0012 3.6435 -3.7607 30 1 4.1537 0.6669 0.0013 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709979580.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:53 Heat of formation + Delta-G solvation = 5.837393 kcal Electronic energy + Delta-G solvation = -13624.476076 eV Core-core repulsion = 11227.894662 eV Total energy + Delta-G solvation = -2396.581413 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.30580 -39.03959 -37.09877 -34.61763 -31.39133 -30.35611 -28.64130 -27.63982 -25.72466 -23.75052 -21.88258 -21.08740 -19.07611 -18.80978 -16.77509 -16.63170 -16.08473 -15.86193 -15.76127 -15.46825 -15.01368 -14.32784 -13.86232 -13.62087 -13.26406 -13.01771 -12.82413 -12.60208 -12.25839 -12.10637 -11.89945 -11.79064 -11.60343 -10.89080 -10.60141 -10.41860 -8.87196 -8.71809 -6.44844 0.84000 1.42304 1.55651 1.64144 1.77060 1.79873 2.55884 2.58569 3.13629 3.69923 3.79272 4.05474 4.07532 4.27485 4.34574 4.50494 4.56491 4.73187 4.76433 4.79431 4.85940 5.07632 5.11107 5.16657 5.39437 5.76631 6.07338 6.12129 6.47659 6.50917 6.67349 7.38499 8.67614 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.062217 B = 0.006582 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.929960 B = 4253.296610 C = 4362.766774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.324 6.324 3 C -0.047 4.047 4 C -0.009 4.009 5 N -0.315 5.315 6 N -0.358 5.358 7 C 0.175 3.825 8 H 0.087 0.913 9 C -0.138 4.138 10 C 0.013 3.987 11 C -0.606 4.606 12 H 0.069 0.931 13 C -0.038 4.038 14 N -0.939 5.939 15 Si 1.126 2.874 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.284 1.284 19 C 0.015 3.985 20 H 0.119 0.881 21 H 0.061 0.939 22 H 0.054 0.946 23 H 0.214 0.786 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.087 0.913 27 H -0.024 1.024 28 H -0.004 1.004 29 H 0.252 0.748 30 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 -6.479 9.725 14.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.237 6.237 3 C -0.102 4.102 4 C -0.194 4.194 5 N -0.139 5.139 6 N -0.145 5.145 7 C 0.075 3.925 8 H 0.105 0.895 9 C -0.196 4.196 10 C -0.025 4.025 11 C -0.644 4.644 12 H 0.087 0.913 13 C -0.235 4.235 14 N -0.576 5.576 15 Si 0.946 3.054 16 H -0.185 1.185 17 H -0.204 1.204 18 H -0.210 1.210 19 C -0.130 4.130 20 H 0.137 0.863 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.230 0.770 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.106 0.894 27 H -0.005 1.005 28 H 0.014 0.986 29 H 0.062 0.938 30 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.738 -4.788 8.772 12.053 hybrid contribution -1.871 -1.369 0.460 2.363 sum -8.609 -6.157 9.232 14.044 Atomic orbital electron populations 1.23221 0.76637 1.05199 1.01788 1.85948 1.22875 1.23380 1.91542 1.18688 0.91388 0.85999 1.14108 1.24437 1.00895 0.89586 1.04497 1.77197 0.89147 1.23629 1.23954 1.49015 1.05646 1.03875 1.55934 1.21366 0.76905 0.96284 0.97990 0.89524 1.21984 0.98824 1.00156 0.98623 1.19479 0.95626 0.95659 0.91740 1.22307 1.08982 1.36520 0.96572 0.91282 1.27508 1.06358 0.97860 0.91774 1.70864 1.21990 1.35403 1.29354 0.82836 0.71027 0.74713 0.76790 1.18478 1.20431 1.21041 1.21886 0.96658 0.87165 1.07275 0.86320 0.91991 0.92681 0.76982 0.90817 0.91750 0.89426 1.00548 0.98550 0.93835 0.79282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.15 113.37 1.15 1.62 16 2 O -0.32 -9.20 10.59 -96.09 -1.02 -10.22 16 3 C -0.05 -1.56 6.96 22.11 0.15 -1.40 16 4 C -0.01 -0.29 11.07 85.29 0.94 0.65 16 5 N -0.32 -12.61 12.57 -56.85 -0.71 -13.33 16 6 N -0.36 -14.39 3.55 -326.50 -1.16 -15.55 16 7 C 0.17 7.34 3.35 44.99 0.15 7.49 16 8 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 9 C -0.14 -4.68 8.65 71.98 0.62 -4.05 16 10 C 0.01 0.68 4.08 29.85 0.12 0.80 16 11 C -0.61 -33.11 8.41 25.60 0.22 -32.89 16 12 H 0.07 3.53 7.06 -2.91 -0.02 3.51 16 13 C -0.04 -2.14 5.46 84.66 0.46 -1.68 16 14 N -0.94 -58.53 13.65 21.45 0.29 -58.24 16 15 Si 1.13 49.00 29.90 68.60 2.05 51.05 16 16 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 17 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 C 0.02 0.54 10.65 83.45 0.89 1.43 16 20 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 22 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 23 H 0.21 4.90 7.69 -2.92 -0.02 4.88 16 24 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.06 2.09 7.17 -2.39 -0.02 2.07 16 26 H 0.09 3.04 6.95 -2.39 -0.02 3.02 16 27 H -0.02 -1.42 8.00 -2.39 -0.02 -1.44 16 28 H 0.00 -0.21 8.01 -2.39 -0.02 -0.23 16 29 H 0.25 16.20 7.22 -92.71 -0.67 15.53 16 30 H 0.19 5.88 7.29 -2.91 -0.02 5.86 16 Total: -1.00 -69.41 260.39 5.38 -64.03 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.22 Total: 10.29 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 4.71 Total: -28.04 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -1.58 Total: -87.11 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -1.02 Total: -10.22 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.05 Total: 51.05 kcal Total: -69.41 5.38 -64.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979580.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.863 kcal (2) G-P(sol) polarization free energy of solvation -69.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds