Wall clock time and date at job start Mon Mar 30 2020 02:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46904 * 109.47024 * 119.99953 * 2 1 3 14 14 C 1.46895 * 110.99693 * 275.00073 * 13 2 1 15 15 C 1.50704 * 109.47165 * 180.02562 * 14 13 2 16 16 C 1.41379 * 126.80238 * 94.70752 * 15 14 13 17 17 C 1.35455 * 103.98172 * 179.89281 * 16 15 14 18 18 O 1.34032 * 106.44689 * 0.36678 * 17 16 15 19 19 N 1.20921 * 111.57236 * 359.75134 * 18 17 16 20 20 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 21 21 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 22 22 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 24 24 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 25 25 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 26 26 H 1.00894 * 110.99680 * 38.95122 * 13 2 1 27 27 H 1.08999 * 109.47253 * 299.99875 * 14 13 2 28 28 H 1.09005 * 109.47412 * 59.99805 * 14 13 2 29 29 H 1.07999 * 128.00417 * 0.02562 * 16 15 14 30 30 H 1.08001 * 126.77271 * 180.09860 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3468 15 6 2.5884 -0.5214 3.5558 16 6 3.9255 -0.5891 4.0102 17 6 3.8558 -1.3662 5.1176 18 8 2.5683 -1.7107 5.2590 19 7 1.8818 -1.2338 4.3852 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 1.6055 -0.2619 -2.1370 24 1 1.7517 -1.7715 -1.2055 25 1 6.0246 -1.4984 -3.1541 26 1 1.4495 -1.4978 1.4100 27 1 2.7588 1.0462 2.1182 28 1 1.0870 0.6164 2.5525 29 1 4.7995 -0.1264 3.5763 30 1 4.6765 -1.6550 5.7574 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710011557.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:05 Heat of formation + Delta-G solvation = 34.333100 kcal Electronic energy + Delta-G solvation = -13549.729822 eV Core-core repulsion = 11154.384076 eV Total energy + Delta-G solvation = -2395.345747 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.84921 -38.57732 -35.61417 -34.46296 -32.69772 -31.86615 -29.53979 -26.83749 -24.54840 -24.00993 -21.87177 -21.42241 -18.79277 -18.68580 -18.49176 -16.66364 -16.31304 -15.97080 -15.76260 -14.94463 -14.42296 -14.08116 -13.96194 -13.69413 -13.39722 -13.26962 -12.89078 -12.56955 -12.24039 -11.93782 -11.69883 -11.49898 -11.24696 -11.01943 -10.66726 -10.51626 -9.14536 -8.16699 -6.15113 0.65327 1.29927 1.38637 1.39333 1.50471 2.43103 2.50397 3.13925 3.20898 3.53047 3.70294 4.13131 4.28370 4.35302 4.47327 4.48623 4.57841 4.66583 4.89099 4.95436 5.11953 5.17468 5.17982 5.27135 5.47929 5.76385 6.22229 6.45273 6.56677 6.92122 7.37007 7.45286 9.00583 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.035443 B = 0.007745 C = 0.006821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.810374 B = 3614.162438 C = 4104.012124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 H 0.066 0.934 4 C -0.003 4.003 5 C -0.490 4.490 6 H 0.037 0.963 7 C -0.005 4.005 8 N -0.958 5.958 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.246 1.246 12 H -0.288 1.288 13 N -0.678 5.678 14 C 0.143 3.857 15 C 0.008 3.992 16 C -0.240 4.240 17 C -0.041 4.041 18 O 0.092 5.908 19 N -0.393 5.393 20 H 0.060 0.940 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.025 0.975 24 H 0.012 0.988 25 H 0.260 0.740 26 H 0.335 0.665 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.177 0.823 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.978 0.916 12.642 14.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.007 4.007 3 H 0.084 0.916 4 C -0.041 4.041 5 C -0.528 4.528 6 H 0.055 0.945 7 C -0.199 4.199 8 N -0.601 5.601 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.170 1.170 12 H -0.214 1.214 13 N -0.310 5.310 14 C 0.013 3.987 15 C -0.150 4.150 16 C -0.261 4.261 17 C -0.122 4.122 18 O 0.026 5.974 19 N -0.099 5.099 20 H 0.079 0.921 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.030 0.970 25 H 0.069 0.931 26 H 0.153 0.847 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.195 0.805 30 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -7.493 0.664 12.462 14.557 hybrid contribution 0.175 -0.032 -0.816 0.835 sum -7.318 0.631 11.646 13.769 Atomic orbital electron populations 1.22449 0.95982 1.02202 1.02509 1.21404 0.92411 0.97190 0.89707 0.91605 1.19586 0.94661 0.95757 0.94093 1.21315 0.92048 1.32425 1.07046 0.94506 1.25945 0.95549 0.97648 1.00808 1.70075 1.08416 1.48150 1.33437 0.85746 0.79802 0.79191 0.78335 1.20117 1.16991 1.21429 1.60388 1.58552 1.09243 1.02773 1.20164 0.99722 0.93783 0.85013 1.23785 0.92511 1.00228 0.98513 1.23033 0.98126 1.06001 0.98989 1.26796 0.87726 0.97896 0.99808 1.84745 1.17838 1.55209 1.39581 1.73787 1.20790 1.13532 1.01756 0.92053 0.91218 0.92489 0.95702 0.97013 0.93088 0.84683 0.89296 0.93171 0.80548 0.71918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.09 9.16 71.98 0.66 -4.43 16 2 C 0.10 3.89 2.53 44.91 0.11 4.01 16 3 H 0.07 2.57 7.80 -2.39 -0.02 2.55 16 4 C 0.00 -0.15 3.72 29.85 0.11 -0.04 16 5 C -0.49 -28.38 9.39 25.60 0.24 -28.14 16 6 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 7 C 0.00 -0.29 5.47 84.65 0.46 0.18 16 8 N -0.96 -61.34 13.96 21.45 0.30 -61.04 16 9 Si 0.94 45.43 27.47 68.60 1.88 47.32 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 12 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 13 N -0.68 -25.68 5.95 -495.57 -2.95 -28.63 16 14 C 0.14 4.60 6.07 85.56 0.52 5.12 16 15 C 0.01 0.25 6.84 43.58 0.30 0.54 16 16 C -0.24 -6.38 11.12 22.40 0.25 -6.13 16 17 C -0.04 -0.83 12.30 67.18 0.83 0.00 16 18 O 0.09 2.39 11.20 71.71 0.80 3.19 16 19 N -0.39 -12.27 12.07 -49.56 -0.60 -12.87 16 20 H 0.06 1.59 7.45 -2.39 -0.02 1.57 16 21 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 22 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 23 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 24 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 25 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.34 12.27 8.46 -89.70 -0.76 11.51 16 27 H 0.09 2.87 8.05 -2.39 -0.02 2.85 16 28 H 0.05 1.47 7.44 -2.38 -0.02 1.45 16 29 H 0.18 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.27 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -70.77 260.66 3.24 -67.53 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.32 Total: 13.38 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 3.48 Total: -28.88 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -3.25 Total: -102.54 kcal Atomic # 8 Polarization: 2.39 SS G_CDS: 0.80 Total: 3.19 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.32 kcal Total: -70.77 3.24 -67.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710011557.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.863 kcal (2) G-P(sol) polarization free energy of solvation -70.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds