Wall clock time and date at job start Mon Mar 30 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99590 * 2 1 4 4 H 1.48503 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47351 * 299.99900 * 3 2 1 6 6 H 1.48496 * 109.47279 * 59.99980 * 3 2 1 7 7 C 1.37873 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00354 * 173.70259 * 7 2 1 9 9 C 1.50702 * 119.99973 * 353.70892 * 7 2 1 10 10 C 1.53001 * 115.54975 * 86.10911 * 9 7 2 11 11 O 1.42899 * 109.47435 * 65.11099 * 10 9 7 12 12 C 1.42899 * 114.00424 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47170 * 179.97438 * 12 11 10 14 14 C 1.53785 * 113.61371 * 184.99799 * 13 12 11 15 15 C 1.53783 * 87.17189 * 220.06155 * 14 13 12 16 16 C 1.53782 * 87.07940 * 25.39010 * 15 14 13 17 17 C 1.52999 * 117.50067 * 231.77684 * 9 7 2 18 18 C 1.52991 * 117.50082 * 300.43892 * 9 7 2 19 19 H 0.96999 * 120.00638 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47072 * 305.11197 * 10 9 7 21 21 H 1.08997 * 109.47275 * 185.11166 * 10 9 7 22 22 H 1.09005 * 109.47080 * 59.99749 * 12 11 10 23 23 H 1.09001 * 109.47011 * 299.99516 * 12 11 10 24 24 H 1.08997 * 112.90943 * 316.24917 * 13 12 11 25 25 H 1.09001 * 113.61375 * 105.46736 * 14 13 12 26 26 H 1.08997 * 113.61408 * 334.64972 * 14 13 12 27 27 H 1.09001 * 113.61089 * 139.94013 * 15 14 13 28 28 H 1.08996 * 113.61428 * 270.83928 * 15 14 13 29 29 H 1.09002 * 113.61125 * 89.11965 * 16 15 14 30 30 H 1.08997 * 113.60862 * 219.92867 * 16 15 14 31 31 H 1.08997 * 117.50100 * 215.00404 * 17 9 7 32 32 H 1.08997 * 117.49694 * 0.02562 * 17 9 7 33 33 H 1.09004 * 117.49915 * 359.97248 * 18 9 7 34 34 H 1.09006 * 117.50148 * 144.97246 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0797 -1.1969 -0.1021 9 6 1.2579 -2.4951 0.1441 10 6 0.7194 -3.0940 -1.1568 11 8 1.8126 -3.4600 -2.0011 12 6 1.4169 -4.0320 -3.2494 13 6 2.6615 -4.3829 -4.0671 14 6 2.3448 -4.8946 -5.4823 15 6 3.4741 -5.9190 -5.2822 16 6 3.2196 -5.7869 -3.7713 17 6 1.7341 -3.4673 1.2253 18 6 0.4253 -2.6957 1.4119 19 1 -0.4851 0.8400 -0.0004 20 1 0.0979 -2.3574 -1.6659 21 1 0.1234 -3.9780 -0.9304 22 1 0.8100 -3.3145 -3.8017 23 1 0.8351 -4.9356 -3.0668 24 1 3.4183 -3.5988 -4.0455 25 1 2.5502 -4.1657 -6.2663 26 1 1.3568 -5.3460 -5.5724 27 1 3.2425 -6.9073 -5.6792 28 1 4.4534 -5.5556 -5.5935 29 1 2.4706 -6.4822 -3.3923 30 1 4.1314 -5.7799 -3.1741 31 1 1.6637 -4.5335 1.0099 32 1 2.5871 -3.1656 1.8331 33 1 0.4179 -1.8867 2.1424 34 1 -0.5064 -3.2539 1.3191 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719671481.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:27 Heat of formation + Delta-G solvation = -13.434540 kcal Electronic energy + Delta-G solvation = -13934.432460 eV Core-core repulsion = 11640.555697 eV Total energy + Delta-G solvation = -2293.876764 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.81415 -37.12259 -35.26608 -31.85145 -28.47148 -25.90168 -25.45629 -24.73734 -22.30871 -20.99947 -19.39838 -18.91094 -16.19121 -15.86603 -15.09143 -14.83237 -14.70809 -14.34860 -13.69822 -13.09459 -12.35455 -12.30407 -12.12408 -11.65607 -11.22408 -11.13520 -10.93811 -10.64300 -10.41516 -10.32722 -10.22317 -10.10581 -9.95934 -9.40070 -8.93397 -8.49623 -8.35974 -8.03890 -5.97800 -4.00605 3.32508 3.40396 3.46012 4.35978 4.47495 4.75431 4.85120 4.94513 5.14112 5.32948 5.51914 5.66462 5.75201 5.81934 5.88107 5.92985 5.99878 6.07760 6.19122 6.25127 6.37089 6.43893 6.49174 6.65778 6.78639 6.79594 6.87593 7.13702 7.50875 7.58239 7.95999 8.26319 8.55089 9.00640 9.63710 11.12056 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.033279 B = 0.007854 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.169478 B = 3564.069585 C = 4005.257951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.480 4.480 8 H 0.061 0.939 9 C 0.043 3.957 10 C 0.109 3.891 11 O -0.372 6.372 12 C 0.070 3.930 13 C -0.106 4.106 14 C -0.135 4.135 15 C -0.143 4.143 16 C -0.133 4.133 17 C -0.206 4.206 18 C -0.152 4.152 19 H 0.258 0.742 20 H 0.052 0.948 21 H 0.012 0.988 22 H 0.040 0.960 23 H 0.035 0.965 24 H 0.098 0.902 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.515 -8.812 -7.426 11.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.518 4.518 8 H 0.080 0.920 9 C 0.043 3.957 10 C 0.033 3.967 11 O -0.291 6.291 12 C -0.007 4.007 13 C -0.124 4.124 14 C -0.172 4.172 15 C -0.180 4.180 16 C -0.170 4.170 17 C -0.243 4.243 18 C -0.190 4.190 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.030 0.970 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.116 0.884 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.547 -8.654 -7.368 11.647 hybrid contribution -0.035 0.915 -0.061 0.918 sum 2.512 -7.739 -7.428 11.017 Atomic orbital electron populations 1.70018 1.05860 1.26241 1.50236 1.24986 0.94826 0.98911 0.94830 0.86565 0.80379 0.83805 0.77470 1.19654 1.21113 1.21037 1.20450 0.93083 0.88515 1.49706 0.92050 1.18746 0.98155 0.93938 0.84858 1.22149 0.87606 0.94934 0.92036 1.87955 1.32963 1.81061 1.27090 1.22344 0.95465 0.96193 0.86712 1.22533 0.98137 0.97395 0.94320 1.22906 0.98923 0.98652 0.96765 1.22810 0.98878 0.99103 0.97246 1.22957 1.01353 0.96988 0.95742 1.22956 0.98277 0.95763 1.07326 1.22516 0.92135 1.01209 1.03096 0.93224 0.93023 0.96971 0.94162 0.94652 0.88398 0.91511 0.90286 0.91798 0.90343 0.90404 0.91397 0.91715 0.90438 0.89784 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 12.88 55.43 0.71 -24.89 16 2 C 0.07 1.87 5.38 -17.82 -0.10 1.78 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.48 -13.69 8.77 -34.44 -0.30 -14.00 16 8 H 0.06 1.78 7.82 -52.48 -0.41 1.37 16 9 C 0.04 1.13 1.62 -155.66 -0.25 0.88 16 10 C 0.11 2.63 5.76 37.16 0.21 2.84 16 11 O -0.37 -8.48 10.27 -35.23 -0.36 -8.85 16 12 C 0.07 1.25 5.78 37.16 0.21 1.46 16 13 C -0.11 -1.58 4.02 -89.72 -0.36 -1.94 16 14 C -0.13 -1.60 7.64 -25.92 -0.20 -1.79 16 15 C -0.14 -1.56 8.09 -25.92 -0.21 -1.77 16 16 C -0.13 -1.75 7.64 -25.83 -0.20 -1.95 16 17 C -0.21 -4.76 9.96 -26.69 -0.27 -5.03 16 18 C -0.15 -3.69 9.37 -26.70 -0.25 -3.94 16 19 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 20 H 0.05 1.34 8.14 -51.93 -0.42 0.91 16 21 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.58 7.85 -51.93 -0.41 0.17 16 24 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.00 7.90 -51.93 -0.41 0.59 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 33 H 0.08 2.14 8.14 -51.93 -0.42 1.72 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 285.66 15.07 4.30 4.30 Total: -1.00 -29.51 285.66 -7.92 -37.43 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.85 Total: -1.22 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -1.70 Total: -23.46 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.71 Total: -24.89 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.36 Total: -8.85 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.51 -7.92 -37.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719671481.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.999 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds