Wall clock time and date at job start Mon Mar 30 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99590 * 2 1 4 4 H 1.48503 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47351 * 299.99900 * 3 2 1 6 6 H 1.48496 * 109.47279 * 59.99980 * 3 2 1 7 7 C 1.37873 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00354 * 173.70259 * 7 2 1 9 9 C 1.50702 * 119.99973 * 353.70892 * 7 2 1 10 10 C 1.53001 * 115.54975 * 86.10911 * 9 7 2 11 11 O 1.42899 * 109.47435 * 65.11099 * 10 9 7 12 12 C 1.42899 * 114.00424 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47170 * 179.97438 * 12 11 10 14 14 C 1.53785 * 113.61371 * 184.99799 * 13 12 11 15 15 C 1.53783 * 87.17189 * 220.06155 * 14 13 12 16 16 C 1.53782 * 87.07940 * 25.39010 * 15 14 13 17 17 C 1.52999 * 117.50067 * 231.77684 * 9 7 2 18 18 C 1.52991 * 117.50082 * 300.43892 * 9 7 2 19 19 H 0.96999 * 120.00638 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47072 * 305.11197 * 10 9 7 21 21 H 1.08997 * 109.47275 * 185.11166 * 10 9 7 22 22 H 1.09005 * 109.47080 * 59.99749 * 12 11 10 23 23 H 1.09001 * 109.47011 * 299.99516 * 12 11 10 24 24 H 1.08997 * 112.90943 * 316.24917 * 13 12 11 25 25 H 1.09001 * 113.61375 * 105.46736 * 14 13 12 26 26 H 1.08997 * 113.61408 * 334.64972 * 14 13 12 27 27 H 1.09001 * 113.61089 * 139.94013 * 15 14 13 28 28 H 1.08996 * 113.61428 * 270.83928 * 15 14 13 29 29 H 1.09002 * 113.61125 * 89.11965 * 16 15 14 30 30 H 1.08997 * 113.60862 * 219.92867 * 16 15 14 31 31 H 1.08997 * 117.50100 * 215.00404 * 17 9 7 32 32 H 1.08997 * 117.49694 * 0.02562 * 17 9 7 33 33 H 1.09004 * 117.49915 * 359.97248 * 18 9 7 34 34 H 1.09006 * 117.50148 * 144.97246 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0797 -1.1969 -0.1021 9 6 1.2579 -2.4951 0.1441 10 6 0.7194 -3.0940 -1.1568 11 8 1.8126 -3.4600 -2.0011 12 6 1.4169 -4.0320 -3.2494 13 6 2.6615 -4.3829 -4.0671 14 6 2.3448 -4.8946 -5.4823 15 6 3.4741 -5.9190 -5.2822 16 6 3.2196 -5.7869 -3.7713 17 6 1.7341 -3.4673 1.2253 18 6 0.4253 -2.6957 1.4119 19 1 -0.4851 0.8400 -0.0004 20 1 0.0979 -2.3574 -1.6659 21 1 0.1234 -3.9780 -0.9304 22 1 0.8100 -3.3145 -3.8017 23 1 0.8351 -4.9356 -3.0668 24 1 3.4183 -3.5988 -4.0455 25 1 2.5502 -4.1657 -6.2663 26 1 1.3568 -5.3460 -5.5724 27 1 3.2425 -6.9073 -5.6792 28 1 4.4534 -5.5556 -5.5935 29 1 2.4706 -6.4822 -3.3923 30 1 4.1314 -5.7799 -3.1741 31 1 1.6637 -4.5335 1.0099 32 1 2.5871 -3.1656 1.8331 33 1 0.4179 -1.8867 2.1424 34 1 -0.5064 -3.2539 1.3191 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719671481.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:27 Heat of formation + Delta-G solvation = -29.409584 kcal Electronic energy + Delta-G solvation = -13935.125190 eV Core-core repulsion = 11640.555697 eV Total energy + Delta-G solvation = -2294.569493 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.01108 -38.84698 -37.02071 -33.99450 -29.86210 -27.83974 -26.75147 -26.37095 -23.53247 -22.88198 -21.14578 -20.21711 -18.19686 -17.26959 -16.85666 -16.47701 -16.23563 -15.90169 -15.32622 -14.79629 -13.94959 -13.58360 -13.42360 -13.29701 -12.96702 -12.86650 -12.58296 -12.36664 -12.26495 -12.05077 -11.45543 -11.39402 -11.15257 -11.13454 -10.82383 -10.44154 -10.31253 -9.97894 -8.12343 -6.21645 1.38529 1.40508 1.52472 2.42525 2.84872 3.16945 3.56702 3.72741 3.81091 3.95187 4.05463 4.29486 4.41383 4.51027 4.54426 4.63834 4.65145 4.85177 4.86908 4.87624 4.89959 4.98420 5.00577 5.10985 5.15996 5.21665 5.38618 5.60386 5.61371 5.63500 5.77140 6.39386 6.62058 6.82549 7.45494 8.97007 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.033279 B = 0.007854 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.169478 B = 3564.069585 C = 4005.257951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.045 0.955 9 C 0.006 3.994 10 C 0.122 3.878 11 O -0.395 6.395 12 C 0.064 3.936 13 C -0.119 4.119 14 C -0.126 4.126 15 C -0.129 4.129 16 C -0.136 4.136 17 C -0.184 4.184 18 C -0.149 4.149 19 H 0.261 0.739 20 H 0.022 0.978 21 H 0.033 0.967 22 H 0.035 0.965 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.871 -9.822 -8.214 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.006 3.994 10 C 0.045 3.955 11 O -0.315 6.315 12 C -0.012 4.012 13 C -0.138 4.138 14 C -0.163 4.163 15 C -0.166 4.166 16 C -0.173 4.173 17 C -0.221 4.221 18 C -0.187 4.187 19 H 0.070 0.930 20 H 0.041 0.959 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.908 -9.674 -8.160 12.986 hybrid contribution -0.140 1.200 0.169 1.220 sum 2.767 -8.474 -7.991 11.972 Atomic orbital electron populations 1.70103 1.06940 1.27077 1.50711 1.25666 0.95667 1.01894 0.94446 0.85626 0.79098 0.79933 0.77749 1.19537 1.20604 1.20161 1.20651 0.92593 0.90405 1.50262 0.93705 1.18932 0.99749 0.94332 0.86420 1.21842 0.87573 0.94816 0.91265 1.87917 1.33100 1.81544 1.28892 1.22645 0.97247 0.96374 0.84983 1.22634 0.96721 0.98016 0.96416 1.22909 1.00010 0.98881 0.94524 1.22764 0.98872 0.99917 0.95096 1.22999 1.01047 0.95648 0.97603 1.22953 0.97463 0.96558 1.05121 1.22439 0.93445 1.01106 1.01709 0.93045 0.95935 0.94916 0.94698 0.92918 0.90227 0.90693 0.89175 0.89707 0.89622 0.89898 0.92143 0.89233 0.90487 0.91741 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.12 12.88 21.45 0.28 -52.85 16 2 C 0.02 1.30 5.38 84.65 0.46 1.76 16 3 Si 0.95 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.50 -29.07 8.77 25.60 0.22 -28.85 16 8 H 0.04 2.66 7.82 -2.91 -0.02 2.64 16 9 C 0.01 0.32 1.62 -52.93 -0.09 0.23 16 10 C 0.12 5.87 5.76 71.98 0.41 6.29 16 11 O -0.39 -18.10 10.27 -148.98 -1.53 -19.63 16 12 C 0.06 2.25 5.78 71.98 0.42 2.66 16 13 C -0.12 -3.47 4.02 -10.21 -0.04 -3.51 16 14 C -0.13 -2.68 7.64 31.12 0.24 -2.44 16 15 C -0.13 -2.45 8.09 31.12 0.25 -2.20 16 16 C -0.14 -3.33 7.64 31.18 0.24 -3.09 16 17 C -0.18 -8.29 9.96 30.62 0.30 -7.99 16 18 C -0.15 -7.19 9.37 30.62 0.29 -6.90 16 19 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 20 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.03 1.42 8.09 -2.39 -0.02 1.40 16 22 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 23 H 0.05 1.65 7.85 -2.39 -0.02 1.63 16 24 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.09 1.73 8.10 -2.39 -0.02 1.72 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.94 7.90 -2.39 -0.02 1.92 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 32 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.06 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.08 3.48 8.14 -2.38 -0.02 3.46 16 Total: -1.00 -62.79 285.66 4.51 -58.27 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.04 Total: 11.35 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 2.70 Total: -44.04 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.28 Total: -52.85 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -1.53 Total: -19.63 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -62.79 4.51 -58.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719671481.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.863 kcal (2) G-P(sol) polarization free energy of solvation -62.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds