Wall clock time and date at job start Mon Mar 30 2020 02:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12407 * 1 3 3 N 1.12399 * 179.97438 * 2 1 4 4 C 1.46501 * 119.99903 * 119.78114 * 3 2 1 5 5 C 1.52999 * 109.47392 * 119.99338 * 4 3 2 6 6 H 1.09003 * 109.49410 * 55.06543 * 5 4 3 7 7 C 1.53039 * 109.49906 * 175.15998 * 5 4 3 8 8 C 1.53034 * 109.53743 * 181.31867 * 7 5 4 9 9 C 1.53624 * 109.24424 * 298.51129 * 8 7 5 10 10 N 1.46921 * 108.53972 * 54.85705 * 9 8 7 11 11 C 1.36944 * 120.63010 * 126.37254 * 10 9 8 12 12 H 1.07998 * 119.99791 * 331.42071 * 11 10 9 13 13 C 1.38811 * 120.00430 * 151.43106 * 11 10 9 14 14 N 1.31609 * 120.00290 * 160.52881 * 13 11 10 15 15 Si 1.86808 * 119.99465 * 340.52376 * 13 11 10 16 16 H 1.48496 * 109.47121 * 95.16120 * 15 13 11 17 17 H 1.48504 * 109.46792 * 215.15705 * 15 13 11 18 18 H 1.48503 * 109.47209 * 335.15708 * 15 13 11 19 19 C 1.46927 * 118.74008 * 306.09155 * 10 9 8 20 20 H 1.09001 * 109.47050 * 359.97438 * 4 3 2 21 21 H 1.09001 * 109.46985 * 240.00061 * 4 3 2 22 22 H 1.09000 * 109.46066 * 301.34057 * 7 5 4 23 23 H 1.09000 * 109.45642 * 61.31169 * 7 5 4 24 24 H 1.08998 * 109.49708 * 58.59137 * 8 7 5 25 25 H 1.09008 * 109.49661 * 178.68458 * 8 7 5 26 26 H 1.09000 * 109.73955 * 295.12172 * 9 8 7 27 27 H 1.08999 * 109.66447 * 174.55017 * 9 8 7 28 28 H 0.97003 * 120.00108 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.58736 * 173.64857 * 19 10 9 30 30 H 1.08996 * 109.58678 * 294.07474 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1241 0.0000 0.0000 3 7 2.2481 0.0005 0.0000 4 6 2.9803 0.6310 -1.1012 5 6 3.8593 1.7560 -0.5512 6 1 4.5079 1.3615 0.2310 7 6 4.7141 2.3351 -1.6808 8 6 5.6174 3.4383 -1.1250 9 6 4.7456 4.5660 -0.5521 10 7 3.8230 3.9879 0.4344 11 6 3.7538 4.4937 1.7052 12 1 4.6201 4.9629 2.1475 13 6 2.5703 4.4031 2.4249 14 7 2.5861 4.5232 3.7354 15 14 0.9551 4.1106 1.5331 16 1 0.6468 2.6580 1.5309 17 1 -0.1330 4.8465 2.2258 18 1 1.0674 4.5950 0.1338 19 6 2.9715 2.8610 0.0299 20 1 2.2717 1.0418 -1.8205 21 1 3.6072 -0.1125 -1.5933 22 1 5.3289 1.5453 -2.1124 23 1 4.0645 2.7514 -2.4508 24 1 6.2500 3.0283 -0.3376 25 1 6.2426 3.8343 -1.9254 26 1 4.1758 5.0347 -1.3545 27 1 5.3789 5.3096 -0.0683 28 1 1.7591 4.4595 4.2383 29 1 2.4339 2.4792 0.8978 30 1 2.2600 3.1935 -0.7260 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885367867.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:49 Heat of formation + Delta-G solvation = 120.412070 kcal Electronic energy + Delta-G solvation = -14286.861729 eV Core-core repulsion = 11927.541398 eV Total energy + Delta-G solvation = -2359.320331 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.45767 -38.25518 -36.08736 -33.40826 -31.74893 -30.66024 -26.86800 -25.31336 -22.66944 -21.38595 -19.51585 -18.72620 -17.81596 -17.40779 -16.76851 -15.67139 -15.25289 -14.26539 -14.07122 -13.60079 -13.38309 -12.89173 -12.67667 -12.11133 -11.81717 -11.54528 -10.88880 -10.69083 -10.56376 -10.15356 -10.07460 -9.88486 -9.70516 -9.48448 -8.68957 -8.60739 -6.98845 -5.96715 -3.34015 1.55773 2.63683 3.29177 3.36124 3.45104 3.47366 4.50122 4.77747 4.96933 5.10777 5.24887 5.30435 5.41230 5.51831 5.72680 5.84781 5.93745 6.02265 6.06608 6.27508 6.29727 6.49042 6.56637 6.65147 6.69373 6.93865 7.94839 8.31944 8.91831 9.70028 9.79145 10.07632 11.19306 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.017614 C = 0.010752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.042661 B = 1589.238451 C = 2603.427579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 N 0.280 4.720 3 N -0.371 5.371 4 C 0.078 3.922 5 C -0.109 4.109 6 H 0.093 0.907 7 C -0.102 4.102 8 C -0.134 4.134 9 C 0.146 3.854 10 N -0.603 5.603 11 C -0.262 4.262 12 H 0.087 0.913 13 C 0.027 3.973 14 N -0.906 5.906 15 Si 0.877 3.123 16 H -0.290 1.290 17 H -0.300 1.300 18 H -0.272 1.272 19 C 0.131 3.869 20 H 0.059 0.941 21 H 0.101 0.899 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.022 0.978 27 H 0.064 0.936 28 H 0.263 0.737 29 H 0.071 0.929 30 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.440 -6.535 -11.988 13.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 N 0.282 4.718 3 N -0.287 5.287 4 C -0.050 4.050 5 C -0.131 4.131 6 H 0.111 0.889 7 C -0.140 4.140 8 C -0.174 4.174 9 C 0.020 3.980 10 N -0.327 5.327 11 C -0.390 4.390 12 H 0.105 0.895 13 C -0.172 4.172 14 N -0.549 5.549 15 Si 0.708 3.292 16 H -0.217 1.217 17 H -0.228 1.228 18 H -0.197 1.197 19 C 0.005 3.995 20 H 0.078 0.922 21 H 0.119 0.881 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.964 -6.741 -11.383 13.375 hybrid contribution -0.983 0.070 -0.792 1.264 sum 0.982 -6.671 -12.175 13.918 Atomic orbital electron populations 1.87605 0.88922 1.31882 1.10890 1.41486 1.01884 1.12975 1.15469 1.70794 0.88339 1.39340 1.30195 1.22745 0.96735 0.97222 0.88249 1.21897 0.97885 0.94330 0.98951 0.88908 1.21396 0.97827 0.98092 0.96729 1.22062 0.98059 0.97357 0.99876 1.21063 0.91714 0.93639 0.91606 1.44295 1.45203 1.32984 1.10170 1.18929 0.96880 1.35427 0.87757 0.89517 1.25284 0.97441 0.99163 0.95354 1.69808 1.27333 1.52808 1.04938 0.87026 0.85098 0.76982 0.80139 1.21729 1.22812 1.19671 1.21375 0.92580 0.87732 0.97858 0.92222 0.88101 0.92504 0.92574 0.91679 0.92513 0.96052 0.91765 0.92705 0.91061 0.96408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.20 -3.44 20.57 60.35 1.24 -2.20 16 2 N 0.28 4.80 10.23 60.35 0.62 5.41 16 3 N -0.37 -6.17 10.88 -10.61 -0.12 -6.29 16 4 C 0.08 1.09 5.96 -4.04 -0.02 1.07 16 5 C -0.11 -1.82 2.55 -90.50 -0.23 -2.05 16 6 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 7 C -0.10 -1.42 5.16 -26.69 -0.14 -1.56 16 8 C -0.13 -2.06 6.10 -26.39 -0.16 -2.22 16 9 C 0.15 2.80 6.54 -3.49 -0.02 2.78 16 10 N -0.60 -14.39 2.75 -172.06 -0.47 -14.86 16 11 C -0.26 -7.40 10.04 -15.06 -0.15 -7.55 16 12 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 13 C 0.03 0.79 5.25 -17.44 -0.09 0.70 16 14 N -0.91 -28.31 13.97 55.49 0.78 -27.53 16 15 Si 0.88 23.16 24.35 -169.99 -4.14 19.02 16 16 H -0.29 -7.50 6.73 56.52 0.38 -7.12 16 17 H -0.30 -8.05 7.11 56.52 0.40 -7.64 16 18 H -0.27 -7.01 6.41 56.52 0.36 -6.64 16 19 C 0.13 2.85 3.28 -3.71 -0.01 2.84 16 20 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 21 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 28 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 29 H 0.07 1.76 4.38 -51.93 -0.23 1.53 16 30 H 0.02 0.40 6.93 -51.93 -0.36 0.04 16 LS Contribution 248.54 15.07 3.75 3.75 Total: -1.00 -31.19 248.54 -3.17 -34.37 By element: Atomic # 1 Polarization: -1.68 SS G_CDS: -3.99 Total: -5.67 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -0.83 Total: -5.99 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 2.04 Total: -45.47 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.14 Total: 19.02 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.19 -3.17 -34.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885367867.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.781 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds