Wall clock time and date at job start Mon Mar 30 2020 02:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.27774 * 60.64060 * 9 7 2 11 11 C 1.54948 * 110.30909 * 182.83430 * 9 7 2 12 12 C 1.55307 * 100.94053 * 155.35818 * 11 9 7 13 13 C 1.54374 * 102.25684 * 325.86845 * 12 11 9 14 14 H 1.09002 * 109.83233 * 261.84579 * 13 12 11 15 15 C 1.53000 * 109.83378 * 140.87065 * 13 12 11 16 16 C 1.52994 * 109.47378 * 175.41450 * 15 13 12 17 17 C 1.53781 * 113.61436 * 272.49661 * 16 15 13 18 18 C 1.53779 * 87.08331 * 220.01820 * 17 16 15 19 19 C 1.53778 * 87.08140 * 25.43196 * 18 17 16 20 20 O 1.43243 * 107.58923 * 21.35440 * 13 12 11 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08991 * 111.12513 * 273.27592 * 11 9 7 23 23 H 1.08998 * 111.12551 * 37.44407 * 11 9 7 24 24 H 1.09000 * 110.84607 * 207.67805 * 12 11 9 25 25 H 1.09005 * 110.84606 * 84.06257 * 12 11 9 26 26 H 1.09008 * 109.46863 * 295.41318 * 15 13 12 27 27 H 1.08996 * 109.47256 * 55.41282 * 15 13 12 28 28 H 1.09003 * 112.85179 * 43.79901 * 16 15 13 29 29 H 1.09003 * 113.61576 * 334.56770 * 17 16 15 30 30 H 1.08999 * 113.61714 * 105.46808 * 17 16 15 31 31 H 1.09002 * 113.61593 * 270.88230 * 18 17 16 32 32 H 1.08998 * 113.69570 * 139.99257 * 18 17 16 33 33 H 1.09003 * 113.61521 * 220.02548 * 19 18 17 34 34 H 1.08997 * 113.61928 * 89.11520 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6277 -2.5754 -0.8914 11 6 2.2391 -3.6906 0.0707 12 6 1.3340 -4.7871 0.6957 13 6 0.4302 -3.9666 1.6407 14 1 0.8165 -4.0178 2.6586 15 6 -0.9980 -4.5137 1.5977 16 6 -1.8599 -3.7703 2.6200 17 6 -1.8221 -4.3922 4.0260 18 6 -3.3299 -4.1018 4.1095 19 6 -3.3465 -4.1611 2.5729 20 8 0.4447 -2.6093 1.1832 21 1 -0.4850 0.8401 0.0004 22 1 2.5773 -3.9804 -0.9241 23 1 3.0842 -3.4619 0.7199 24 1 1.9289 -5.5078 1.2567 25 1 0.7418 -5.2853 -0.0720 26 1 -1.4124 -4.3695 0.5998 27 1 -0.9871 -5.5771 1.8364 28 1 -1.6911 -2.6935 2.6129 29 1 -1.5815 -5.4554 4.0268 30 1 -1.2274 -3.8222 4.7398 31 1 -3.5630 -3.1155 4.5109 32 1 -3.9038 -4.8980 4.5834 33 1 -3.9825 -3.4044 2.1136 34 1 -3.5227 -5.1610 2.1764 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885371084.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:44 Heat of formation + Delta-G solvation = -46.777820 kcal Electronic energy + Delta-G solvation = -14283.054792 eV Core-core repulsion = 11987.732156 eV Total energy + Delta-G solvation = -2295.322637 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.87785 -37.56963 -32.71776 -30.92209 -30.57619 -27.10992 -25.29491 -24.28287 -22.16809 -20.35690 -19.76477 -18.83650 -16.52008 -15.61395 -15.03566 -14.75719 -14.32294 -14.16212 -12.96552 -12.87322 -12.31476 -12.15497 -11.94762 -11.70197 -11.36416 -11.13136 -10.82749 -10.71099 -10.55631 -10.32618 -10.20637 -10.06254 -9.78713 -9.59423 -9.36279 -9.01830 -8.50469 -7.77307 -5.94765 -4.07600 3.35115 3.39471 3.41911 4.46487 4.96664 4.99371 5.05510 5.15026 5.21541 5.52091 5.59118 5.67517 5.87424 5.96459 5.99099 6.02756 6.09384 6.15404 6.22152 6.29618 6.36563 6.45237 6.54693 6.68205 6.72460 6.78404 6.84514 7.03934 7.09607 7.65509 7.94253 8.33467 8.71978 9.11649 9.62773 11.12478 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.033129 B = 0.008966 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.975417 B = 3122.160625 C = 3709.935437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.890 3.110 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.211 3.789 10 H 0.025 0.975 11 C -0.148 4.148 12 C -0.154 4.154 13 C 0.075 3.925 14 H 0.055 0.945 15 C -0.113 4.113 16 C -0.099 4.099 17 C -0.139 4.139 18 C -0.142 4.142 19 C -0.141 4.141 20 O -0.352 6.352 21 H 0.260 0.740 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.235 -8.818 4.568 10.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.128 4.128 3 Si 0.717 3.283 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.156 3.844 10 H 0.042 0.958 11 C -0.186 4.186 12 C -0.191 4.191 13 C 0.016 3.984 14 H 0.073 0.927 15 C -0.151 4.151 16 C -0.117 4.117 17 C -0.177 4.177 18 C -0.180 4.180 19 C -0.178 4.178 20 O -0.272 6.272 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.517 -8.535 4.655 10.339 hybrid contribution 0.543 0.660 -0.062 0.857 sum -2.974 -7.875 4.594 9.589 Atomic orbital electron populations 1.70037 1.05947 1.26477 1.47361 1.25064 0.94767 0.99138 0.93801 0.86718 0.79731 0.83188 0.78642 1.21217 1.20149 1.20167 1.21086 0.92607 0.90264 1.53377 0.92109 1.20478 0.86693 0.92122 0.85115 0.95781 1.23321 0.99301 0.96373 0.99571 1.23142 0.98475 0.98370 0.99139 1.22472 0.92982 0.86223 0.96764 0.92731 1.21910 0.96252 0.97558 0.99338 1.22469 0.93737 1.01550 0.93928 1.22986 0.96033 1.00408 0.98257 1.22782 0.97014 1.01275 0.96892 1.22951 0.97894 1.01139 0.95823 1.88819 1.71854 1.20951 1.45545 0.93002 0.92223 0.91758 0.92189 0.91872 0.91874 0.92796 0.87916 0.90797 0.91892 0.90503 0.92274 0.91816 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.98 12.93 55.43 0.72 -25.27 16 2 C 0.08 2.25 5.42 -17.82 -0.10 2.16 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.54 -15.38 8.81 -34.44 -0.30 -15.69 16 8 H 0.06 1.69 7.77 -52.49 -0.41 1.28 16 9 C 0.21 5.59 3.27 -26.86 -0.09 5.50 16 10 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.15 -3.16 6.53 -24.48 -0.16 -3.32 16 12 C -0.15 -2.82 6.54 -24.79 -0.16 -2.99 16 13 C 0.07 1.53 3.52 -26.01 -0.09 1.44 16 14 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.11 -2.00 4.62 -26.73 -0.12 -2.12 16 16 C -0.10 -1.69 3.60 -89.81 -0.32 -2.01 16 17 C -0.14 -2.00 7.63 -25.92 -0.20 -2.20 16 18 C -0.14 -1.86 8.08 -25.92 -0.21 -2.07 16 19 C -0.14 -2.04 7.64 -25.92 -0.20 -2.24 16 20 O -0.35 -9.27 9.76 -35.23 -0.34 -9.61 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 23 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 1.09 7.85 -51.93 -0.41 0.68 16 26 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 27 H 0.05 0.82 7.84 -51.93 -0.41 0.41 16 28 H 0.10 2.12 7.76 -51.93 -0.40 1.72 16 29 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 276.06 15.07 4.16 4.16 Total: -1.00 -30.20 276.06 -8.25 -38.46 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.81 Total: -0.90 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -1.95 Total: -23.53 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.72 Total: -25.27 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.34 Total: -9.61 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.20 -8.25 -38.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885371084.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.320 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds