Wall clock time and date at job start Mon Mar 30 2020 02:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.27774 * 60.64060 * 9 7 2 11 11 C 1.54948 * 110.30909 * 182.83430 * 9 7 2 12 12 C 1.55307 * 100.94053 * 155.35818 * 11 9 7 13 13 C 1.54374 * 102.25684 * 325.86845 * 12 11 9 14 14 H 1.09002 * 109.83233 * 261.84579 * 13 12 11 15 15 C 1.53000 * 109.83378 * 140.87065 * 13 12 11 16 16 C 1.52994 * 109.47378 * 175.41450 * 15 13 12 17 17 C 1.53781 * 113.61436 * 272.49661 * 16 15 13 18 18 C 1.53779 * 87.08331 * 220.01820 * 17 16 15 19 19 C 1.53778 * 87.08140 * 25.43196 * 18 17 16 20 20 O 1.43243 * 107.58923 * 21.35440 * 13 12 11 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08991 * 111.12513 * 273.27592 * 11 9 7 23 23 H 1.08998 * 111.12551 * 37.44407 * 11 9 7 24 24 H 1.09000 * 110.84607 * 207.67805 * 12 11 9 25 25 H 1.09005 * 110.84606 * 84.06257 * 12 11 9 26 26 H 1.09008 * 109.46863 * 295.41318 * 15 13 12 27 27 H 1.08996 * 109.47256 * 55.41282 * 15 13 12 28 28 H 1.09003 * 112.85179 * 43.79901 * 16 15 13 29 29 H 1.09003 * 113.61576 * 334.56770 * 17 16 15 30 30 H 1.08999 * 113.61714 * 105.46808 * 17 16 15 31 31 H 1.09002 * 113.61593 * 270.88230 * 18 17 16 32 32 H 1.08998 * 113.69570 * 139.99257 * 18 17 16 33 33 H 1.09003 * 113.61521 * 220.02548 * 19 18 17 34 34 H 1.08997 * 113.61928 * 89.11520 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6277 -2.5754 -0.8914 11 6 2.2391 -3.6906 0.0707 12 6 1.3340 -4.7871 0.6957 13 6 0.4302 -3.9666 1.6407 14 1 0.8165 -4.0178 2.6586 15 6 -0.9980 -4.5137 1.5977 16 6 -1.8599 -3.7703 2.6200 17 6 -1.8221 -4.3922 4.0260 18 6 -3.3299 -4.1018 4.1095 19 6 -3.3465 -4.1611 2.5729 20 8 0.4447 -2.6093 1.1832 21 1 -0.4850 0.8401 0.0004 22 1 2.5773 -3.9804 -0.9241 23 1 3.0842 -3.4619 0.7199 24 1 1.9289 -5.5078 1.2567 25 1 0.7418 -5.2853 -0.0720 26 1 -1.4124 -4.3695 0.5998 27 1 -0.9871 -5.5771 1.8364 28 1 -1.6911 -2.6935 2.6129 29 1 -1.5815 -5.4554 4.0268 30 1 -1.2274 -3.8222 4.7398 31 1 -3.5630 -3.1155 4.5109 32 1 -3.9038 -4.8980 4.5834 33 1 -3.9825 -3.4044 2.1136 34 1 -3.5227 -5.1610 2.1764 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885371084.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:44 Heat of formation + Delta-G solvation = -64.272202 kcal Electronic energy + Delta-G solvation = -14283.813406 eV Core-core repulsion = 11987.732156 eV Total energy + Delta-G solvation = -2296.081250 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.36388 -39.10161 -34.81389 -32.67720 -32.27085 -28.91824 -26.48643 -26.03435 -23.68875 -22.09643 -21.42438 -20.08616 -18.62391 -17.27412 -16.77846 -16.33779 -16.02623 -15.54226 -14.76290 -14.39679 -14.07656 -13.66718 -13.44699 -13.25311 -12.82363 -12.74417 -12.51415 -12.38584 -12.21737 -12.10080 -11.89850 -11.45147 -11.29787 -11.03076 -10.91254 -10.79308 -10.60825 -9.73262 -8.13711 -6.34944 1.38857 1.42337 1.49803 2.40478 3.07273 3.62658 3.73461 3.82814 3.94780 3.98918 4.01534 4.23664 4.42077 4.54988 4.62981 4.70243 4.78974 4.84659 4.89664 4.96393 5.02896 5.08385 5.09795 5.16870 5.19815 5.25486 5.40132 5.55101 5.64016 5.73451 5.76992 6.19955 6.62627 7.12338 7.41478 8.93787 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.033129 B = 0.008966 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.975417 B = 3122.160625 C = 3709.935437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.021 3.979 3 Si 0.961 3.039 4 H -0.283 1.283 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.560 4.560 8 H 0.064 0.936 9 C 0.201 3.799 10 H -0.012 1.012 11 C -0.141 4.141 12 C -0.140 4.140 13 C 0.060 3.940 14 H 0.059 0.941 15 C -0.104 4.104 16 C -0.116 4.116 17 C -0.130 4.130 18 C -0.132 4.132 19 C -0.136 4.136 20 O -0.389 6.389 21 H 0.260 0.740 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 -10.442 5.424 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.181 4.181 3 Si 0.785 3.215 4 H -0.208 1.208 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.597 4.597 8 H 0.082 0.918 9 C 0.146 3.854 10 H 0.005 0.995 11 C -0.179 4.179 12 C -0.177 4.177 13 C 0.002 3.998 14 H 0.077 0.923 15 C -0.142 4.142 16 C -0.135 4.135 17 C -0.168 4.168 18 C -0.170 4.170 19 C -0.174 4.174 20 O -0.310 6.310 21 H 0.069 0.931 22 H 0.094 0.906 23 H 0.082 0.918 24 H 0.115 0.885 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.032 -10.174 5.512 11.962 hybrid contribution 0.384 1.132 -0.327 1.239 sum -2.648 -9.042 5.185 10.754 Atomic orbital electron populations 1.70195 1.07699 1.27310 1.48630 1.25987 0.95654 1.03133 0.93330 0.85588 0.78407 0.78303 0.79155 1.20816 1.19539 1.18738 1.21550 0.93080 0.91842 1.53249 0.91777 1.20376 0.87256 0.93710 0.84102 0.99486 1.23197 0.98489 0.95301 1.00890 1.23114 0.97776 0.97745 0.99072 1.22809 0.95421 0.84281 0.97269 0.92281 1.21845 0.94344 0.99496 0.98466 1.22414 0.95990 0.98848 0.96228 1.22981 0.96887 1.01304 0.95604 1.22741 0.96430 1.02066 0.95738 1.22968 0.95378 1.01804 0.97219 1.88735 1.72119 1.24884 1.45226 0.93104 0.90613 0.91835 0.88541 0.90539 0.93935 0.89044 0.92952 0.88426 0.92608 0.91023 0.89454 0.92945 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.47 12.93 21.45 0.28 -56.19 16 2 C 0.02 1.23 5.42 84.66 0.46 1.69 16 3 Si 0.96 45.34 29.54 68.60 2.03 47.36 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.56 -32.94 8.81 25.60 0.23 -32.71 16 8 H 0.06 3.60 7.77 -2.91 -0.02 3.58 16 9 C 0.20 10.98 3.27 30.51 0.10 11.08 16 10 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 11 C -0.14 -5.91 6.53 32.05 0.21 -5.70 16 12 C -0.14 -4.82 6.54 31.85 0.21 -4.61 16 13 C 0.06 2.44 3.52 31.06 0.11 2.55 16 14 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.10 -3.59 4.62 30.59 0.14 -3.44 16 16 C -0.12 -3.98 3.60 -10.27 -0.04 -4.02 16 17 C -0.13 -3.48 7.63 31.12 0.24 -3.25 16 18 C -0.13 -3.19 8.08 31.12 0.25 -2.93 16 19 C -0.14 -3.79 7.64 31.12 0.24 -3.55 16 20 O -0.39 -21.25 9.76 -148.98 -1.45 -22.70 16 21 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 22 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 23 H 0.06 2.64 8.05 -2.39 -0.02 2.62 16 24 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 25 H 0.08 2.44 7.85 -2.38 -0.02 2.42 16 26 H 0.04 1.61 8.14 -2.38 -0.02 1.60 16 27 H 0.09 2.46 7.84 -2.39 -0.02 2.44 16 28 H 0.05 2.31 7.76 -2.39 -0.02 2.29 16 29 H 0.10 2.17 7.90 -2.39 -0.02 2.15 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 2.24 8.10 -2.39 -0.02 2.22 16 Total: -1.00 -68.07 276.06 4.03 -64.04 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.04 Total: 12.38 kcal Atomic # 6 Polarization: -47.04 SS G_CDS: 2.14 Total: -44.89 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.28 Total: -56.19 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -1.45 Total: -22.70 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -68.07 4.03 -64.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885371084.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.230 kcal (2) G-P(sol) polarization free energy of solvation -68.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds