Wall clock time and date at job start Mon Mar 30 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47061 * 2 1 4 4 C 1.53000 * 109.46985 * 240.00210 * 2 1 3 5 5 C 1.53004 * 109.47041 * 179.97438 * 4 2 1 6 6 C 1.53010 * 109.46718 * 60.00288 * 5 4 2 7 7 C 1.52992 * 109.46911 * 299.99656 * 6 5 4 8 8 C 1.52996 * 109.47532 * 119.99882 * 2 1 3 9 9 C 1.50702 * 109.46842 * 60.00223 * 8 2 1 10 10 O 1.20763 * 120.00124 * 120.00389 * 9 8 2 11 11 C 1.53000 * 109.47253 * 300.00164 * 8 2 1 12 12 C 1.50701 * 109.47333 * 179.97438 * 11 8 2 13 13 H 1.08001 * 119.99532 * 0.02562 * 12 11 8 14 14 C 1.37874 * 120.00137 * 179.97438 * 12 11 8 15 15 N 1.31515 * 120.00193 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99995 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47051 * 89.99794 * 16 14 12 18 18 H 1.48495 * 109.46954 * 209.99661 * 16 14 12 19 19 H 1.48500 * 109.47223 * 329.99881 * 16 14 12 20 20 H 1.09003 * 109.46642 * 299.99659 * 1 2 3 21 21 H 1.08990 * 109.47421 * 60.00056 * 1 2 3 22 22 H 1.08999 * 109.46346 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47084 * 60.00132 * 4 2 1 24 24 H 1.08994 * 109.47175 * 299.99560 * 4 2 1 25 25 H 1.08994 * 109.47336 * 300.00146 * 5 4 2 26 26 H 1.09000 * 109.47109 * 179.97438 * 5 4 2 27 27 H 1.09001 * 109.46866 * 179.97438 * 6 5 4 28 28 H 1.09003 * 109.47203 * 59.99622 * 6 5 4 29 29 H 1.09007 * 109.47391 * 300.00412 * 7 6 5 30 30 H 1.08998 * 109.47341 * 180.02562 * 7 6 5 31 31 H 1.08005 * 119.99933 * 299.72321 * 9 8 2 32 32 H 1.08994 * 109.47175 * 299.99940 * 11 8 2 33 33 H 1.09001 * 109.47192 * 59.99911 * 11 8 2 34 34 H 0.96992 * 120.00032 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4417 -0.0003 7 6 3.5705 -0.7205 1.2489 8 6 2.0401 -0.7212 1.2492 9 6 1.5378 -2.1420 1.2492 10 8 2.3226 -3.0599 1.2492 11 6 1.5302 0.0000 2.4985 12 6 2.0321 -0.7107 3.7289 13 1 2.6531 -1.5887 3.6297 14 6 1.6994 -0.2394 4.9812 15 7 2.1378 -0.8594 6.0550 16 14 0.6259 1.2797 5.1526 17 1 -0.8020 0.8742 5.1983 18 1 0.9775 1.9954 6.4053 19 1 0.8486 2.1770 3.9906 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 1.6767 -0.2073 -2.1393 24 1 1.6767 -1.7488 -1.2493 25 1 3.9330 0.3071 -1.2498 26 1 3.9334 -1.2349 -2.1394 27 1 5.1705 -1.4417 -0.0008 28 1 3.7174 -2.4695 -0.0002 29 1 3.9335 0.3074 1.2487 30 1 3.9345 -1.2338 2.1388 31 1 0.4760 -2.3394 1.2537 32 1 1.8934 1.0276 2.4985 33 1 0.4401 0.0000 2.4985 34 1 1.9034 -0.5280 6.9359 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238396500.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:17 Heat of formation + Delta-G solvation = -63.908969 kcal Electronic energy + Delta-G solvation = -14887.477679 eV Core-core repulsion = 12591.412180 eV Total energy + Delta-G solvation = -2296.065499 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.05422 -36.73691 -33.55729 -32.37719 -31.27835 -27.62845 -25.98505 -23.86949 -22.49595 -21.03133 -20.06593 -18.20414 -16.85515 -15.52569 -14.92275 -14.46839 -14.02245 -13.77895 -13.60860 -13.11827 -12.89877 -12.54855 -12.20424 -11.72785 -11.56393 -11.46700 -11.28771 -11.07487 -10.69961 -10.61250 -10.31019 -10.21918 -9.93451 -9.66833 -9.20932 -9.00869 -8.57650 -8.41424 -6.06908 -4.06242 2.85064 3.26797 3.35467 3.37025 4.40853 4.91491 5.09651 5.11381 5.20803 5.27188 5.50138 5.64007 5.75347 5.82371 5.90224 5.97927 6.04508 6.17986 6.20283 6.24834 6.37211 6.42489 6.57224 6.60226 6.65555 6.82537 6.96443 7.13112 7.16920 7.25623 7.72170 8.23634 8.48772 8.99711 9.54036 11.06028 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.036899 B = 0.011406 C = 0.010204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.649936 B = 2454.348465 C = 2743.372669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.077 4.077 3 H 0.074 0.926 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.135 4.135 7 C -0.088 4.088 8 C -0.103 4.103 9 C 0.377 3.623 10 O -0.470 6.470 11 C 0.001 3.999 12 C -0.526 4.526 13 H 0.077 0.923 14 C 0.070 3.930 15 N -0.898 5.898 16 Si 0.875 3.125 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 H 0.066 0.934 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.026 0.974 33 H 0.021 0.979 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 2.795 -13.019 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.096 4.096 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.172 4.172 7 C -0.126 4.126 8 C -0.104 4.104 9 C 0.234 3.766 10 O -0.342 6.342 11 C -0.036 4.036 12 C -0.564 4.564 13 H 0.095 0.905 14 C -0.132 4.132 15 N -0.537 5.537 16 Si 0.703 3.297 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.189 1.189 20 H 0.085 0.915 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.746 2.302 -12.819 13.140 hybrid contribution -0.661 0.955 0.385 1.224 sum -2.407 3.257 -12.434 13.077 Atomic orbital electron populations 1.21977 0.95506 1.01808 1.01841 1.21121 0.95306 0.99675 0.93505 0.90737 1.21648 0.96006 1.00213 0.97498 1.21533 0.95427 1.00415 0.98061 1.21836 0.99513 1.01402 0.94471 1.21321 0.93291 0.99962 0.97991 1.21322 0.97121 0.95411 0.96514 1.25653 0.93765 0.89948 0.67245 1.90222 1.60673 1.47994 1.35323 1.19623 0.96118 0.96048 0.91799 1.21190 1.32527 1.13680 0.88957 0.90487 1.25013 0.95627 0.96657 0.95884 1.69917 1.45456 1.40377 0.97938 0.86848 0.81119 0.83972 0.77796 1.20252 1.21403 1.18886 0.91531 0.93161 0.92817 0.92378 0.92584 0.92470 0.92942 0.93044 0.90103 0.92698 0.90230 0.90804 0.95593 0.96119 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.58 37.16 0.32 -1.76 16 2 C -0.08 -1.17 2.02 -90.62 -0.18 -1.36 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.12 -1.58 4.98 -26.73 -0.13 -1.71 16 5 C -0.12 -1.63 5.92 -26.72 -0.16 -1.79 16 6 C -0.13 -2.26 5.63 -26.73 -0.15 -2.41 16 7 C -0.09 -1.71 4.12 -26.71 -0.11 -1.82 16 8 C -0.10 -1.94 0.29 -155.64 -0.05 -1.99 16 9 C 0.38 7.35 7.15 36.01 0.26 7.61 16 10 O -0.47 -10.31 14.48 6.00 0.09 -10.23 16 11 C 0.00 0.03 2.75 -27.88 -0.08 -0.05 16 12 C -0.53 -14.38 8.35 -34.44 -0.29 -14.67 16 13 H 0.08 2.35 6.64 -52.49 -0.35 2.00 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 16 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 20 H 0.07 0.96 6.43 -51.93 -0.33 0.63 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.69 6.62 -51.93 -0.34 0.34 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.79 7.22 -51.93 -0.37 0.41 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.49 5.52 -51.93 -0.29 1.20 16 29 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.08 1.81 6.58 -51.93 -0.34 1.47 16 31 H 0.08 1.29 7.01 -52.48 -0.37 0.92 16 32 H 0.03 0.58 7.20 -51.93 -0.37 0.21 16 33 H 0.02 0.44 5.86 -51.93 -0.30 0.14 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 256.32 15.07 3.86 3.86 Total: -1.00 -30.04 256.32 -5.81 -35.86 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.20 Total: -1.14 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -0.67 Total: -18.05 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.77 Total: -26.63 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.04 -5.81 -35.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238396500.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.052 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds