Wall clock time and date at job start Mon Mar 30 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47061 * 2 1 4 4 C 1.53000 * 109.46985 * 240.00210 * 2 1 3 5 5 C 1.53004 * 109.47041 * 179.97438 * 4 2 1 6 6 C 1.53010 * 109.46718 * 60.00288 * 5 4 2 7 7 C 1.52992 * 109.46911 * 299.99656 * 6 5 4 8 8 C 1.52996 * 109.47532 * 119.99882 * 2 1 3 9 9 C 1.50702 * 109.46842 * 60.00223 * 8 2 1 10 10 O 1.20763 * 120.00124 * 120.00389 * 9 8 2 11 11 C 1.53000 * 109.47253 * 300.00164 * 8 2 1 12 12 C 1.50701 * 109.47333 * 179.97438 * 11 8 2 13 13 H 1.08001 * 119.99532 * 0.02562 * 12 11 8 14 14 C 1.37874 * 120.00137 * 179.97438 * 12 11 8 15 15 N 1.31515 * 120.00193 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99995 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47051 * 89.99794 * 16 14 12 18 18 H 1.48495 * 109.46954 * 209.99661 * 16 14 12 19 19 H 1.48500 * 109.47223 * 329.99881 * 16 14 12 20 20 H 1.09003 * 109.46642 * 299.99659 * 1 2 3 21 21 H 1.08990 * 109.47421 * 60.00056 * 1 2 3 22 22 H 1.08999 * 109.46346 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47084 * 60.00132 * 4 2 1 24 24 H 1.08994 * 109.47175 * 299.99560 * 4 2 1 25 25 H 1.08994 * 109.47336 * 300.00146 * 5 4 2 26 26 H 1.09000 * 109.47109 * 179.97438 * 5 4 2 27 27 H 1.09001 * 109.46866 * 179.97438 * 6 5 4 28 28 H 1.09003 * 109.47203 * 59.99622 * 6 5 4 29 29 H 1.09007 * 109.47391 * 300.00412 * 7 6 5 30 30 H 1.08998 * 109.47341 * 180.02562 * 7 6 5 31 31 H 1.08005 * 119.99933 * 299.72321 * 9 8 2 32 32 H 1.08994 * 109.47175 * 299.99940 * 11 8 2 33 33 H 1.09001 * 109.47192 * 59.99911 * 11 8 2 34 34 H 0.96992 * 120.00032 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4417 -0.0003 7 6 3.5705 -0.7205 1.2489 8 6 2.0401 -0.7212 1.2492 9 6 1.5378 -2.1420 1.2492 10 8 2.3226 -3.0599 1.2492 11 6 1.5302 0.0000 2.4985 12 6 2.0321 -0.7107 3.7289 13 1 2.6531 -1.5887 3.6297 14 6 1.6994 -0.2394 4.9812 15 7 2.1378 -0.8594 6.0550 16 14 0.6259 1.2797 5.1526 17 1 -0.8020 0.8742 5.1983 18 1 0.9775 1.9954 6.4053 19 1 0.8486 2.1770 3.9906 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 1.6767 -0.2073 -2.1393 24 1 1.6767 -1.7488 -1.2493 25 1 3.9330 0.3071 -1.2498 26 1 3.9334 -1.2349 -2.1394 27 1 5.1705 -1.4417 -0.0008 28 1 3.7174 -2.4695 -0.0002 29 1 3.9335 0.3074 1.2487 30 1 3.9345 -1.2338 2.1388 31 1 0.4760 -2.3394 1.2537 32 1 1.8934 1.0276 2.4985 33 1 0.4401 0.0000 2.4985 34 1 1.9034 -0.5280 6.9359 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238396500.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:17 Heat of formation + Delta-G solvation = -82.206249 kcal Electronic energy + Delta-G solvation = -14888.271109 eV Core-core repulsion = 12591.412180 eV Total energy + Delta-G solvation = -2296.858929 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.53053 -38.24587 -35.36057 -33.87646 -32.89076 -29.30022 -27.32128 -25.33928 -24.29336 -22.37816 -21.41722 -19.69256 -18.89688 -17.09514 -16.47012 -16.20611 -15.55540 -15.19559 -14.89385 -14.61633 -14.46354 -14.26156 -13.58943 -13.43196 -13.15032 -12.83524 -12.56393 -12.35644 -12.28496 -12.08913 -11.82638 -11.66782 -11.54560 -11.45616 -10.81049 -10.61297 -10.58686 -9.98271 -8.25297 -6.29933 1.27457 1.38697 1.41017 1.52187 2.38545 3.10364 3.48590 3.82648 3.89020 3.99259 4.28020 4.32400 4.50091 4.58517 4.68534 4.70695 4.80267 4.89890 4.99558 5.10345 5.12955 5.23053 5.25319 5.29722 5.36522 5.42198 5.43990 5.53599 5.64416 5.68183 5.73394 6.30898 6.67259 6.80307 7.34074 8.91766 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.036899 B = 0.011406 C = 0.010204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.649936 B = 2454.348465 C = 2743.372669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.072 4.072 3 H 0.082 0.918 4 C -0.113 4.113 5 C -0.113 4.113 6 C -0.131 4.131 7 C -0.087 4.087 8 C -0.104 4.104 9 C 0.371 3.629 10 O -0.501 6.501 11 C 0.006 3.994 12 C -0.525 4.525 13 H 0.026 0.974 14 C 0.002 3.998 15 N -0.955 5.955 16 Si 0.949 3.051 17 H -0.263 1.263 18 H -0.292 1.292 19 H -0.237 1.237 20 H 0.057 0.943 21 H 0.079 0.921 22 H 0.057 0.943 23 H 0.091 0.909 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.027 0.973 31 H 0.104 0.896 32 H 0.031 0.969 33 H 0.040 0.960 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 4.944 -15.608 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.091 4.091 3 H 0.101 0.899 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.168 4.168 7 C -0.125 4.125 8 C -0.105 4.105 9 C 0.231 3.769 10 O -0.376 6.376 11 C -0.032 4.032 12 C -0.563 4.563 13 H 0.044 0.956 14 C -0.194 4.194 15 N -0.596 5.596 16 Si 0.772 3.228 17 H -0.188 1.188 18 H -0.218 1.218 19 H -0.160 1.160 20 H 0.076 0.924 21 H 0.098 0.902 22 H 0.076 0.924 23 H 0.109 0.891 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.120 0.880 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.561 4.453 -15.441 16.460 hybrid contribution -0.005 0.188 1.214 1.228 sum -3.566 4.642 -14.227 15.384 Atomic orbital electron populations 1.21991 0.93808 1.02491 1.02887 1.21116 0.96712 0.99491 0.91747 0.89929 1.21654 0.95446 1.00087 0.97860 1.21523 0.95949 1.00803 0.96722 1.21761 0.99812 1.00349 0.94921 1.21251 0.94255 0.99775 0.97231 1.21320 0.96506 0.95281 0.97368 1.26168 0.94817 0.90012 0.65925 1.90225 1.61693 1.48914 1.36721 1.19561 0.97022 0.95755 0.90820 1.21464 1.31128 1.12312 0.91405 0.95606 1.26058 0.97477 1.00567 0.95335 1.70106 1.47912 1.42926 0.98690 0.85675 0.79208 0.79527 0.78372 1.18768 1.21830 1.16043 0.92397 0.90232 0.92385 0.89072 0.93216 0.91230 0.90972 0.92638 0.92104 0.92171 0.95461 0.87993 0.95111 0.94200 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.58 71.98 0.62 -2.87 16 2 C -0.07 -1.93 2.02 -10.79 -0.02 -1.95 16 3 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.11 -2.62 4.98 30.60 0.15 -2.47 16 5 C -0.11 -2.78 5.92 30.60 0.18 -2.60 16 6 C -0.13 -4.34 5.63 30.59 0.17 -4.17 16 7 C -0.09 -3.45 4.12 30.61 0.13 -3.32 16 8 C -0.10 -3.83 0.29 -52.91 -0.02 -3.84 16 9 C 0.37 14.43 7.15 71.24 0.51 14.94 16 10 O -0.50 -22.72 14.48 -1.46 -0.02 -22.74 16 11 C 0.01 0.25 2.75 29.85 0.08 0.33 16 12 C -0.53 -29.58 8.35 25.60 0.21 -29.36 16 13 H 0.03 1.68 6.64 -2.91 -0.02 1.66 16 14 C 0.00 0.11 5.47 84.65 0.46 0.57 16 15 N -0.96 -60.60 13.96 21.45 0.30 -60.30 16 16 Si 0.95 42.79 27.47 68.60 1.88 44.67 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 18 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 20 H 0.06 1.41 6.43 -2.39 -0.02 1.40 16 21 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.06 1.25 6.62 -2.39 -0.02 1.23 16 23 H 0.09 1.59 8.14 -2.38 -0.02 1.58 16 24 H 0.05 1.23 7.22 -2.39 -0.02 1.21 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 2.27 5.52 -2.39 -0.01 2.26 16 29 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.03 1.32 6.58 -2.39 -0.02 1.30 16 31 H 0.10 3.37 7.01 -2.91 -0.02 3.35 16 32 H 0.03 1.31 7.20 -2.39 -0.02 1.30 16 33 H 0.04 1.59 5.86 -2.39 -0.01 1.58 16 34 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -68.61 256.32 5.65 -62.95 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 1.01 Total: 10.15 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 2.48 Total: -34.74 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.30 Total: -60.30 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.02 Total: -22.74 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Total: -68.61 5.65 -62.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238396500.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.253 kcal (2) G-P(sol) polarization free energy of solvation -68.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds