Wall clock time and date at job start Mon Mar 30 2020 02:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47211 * 2 1 4 4 C 1.50701 * 109.47090 * 120.00278 * 2 1 3 5 5 H 1.07995 * 120.00520 * 119.99852 * 4 2 1 6 6 C 1.37882 * 119.99439 * 300.00022 * 4 2 1 7 7 N 1.31515 * 119.99596 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00506 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46924 * 89.99850 * 8 6 4 10 10 H 1.48494 * 109.47047 * 210.00207 * 8 6 4 11 11 H 1.48504 * 109.46796 * 330.00042 * 8 6 4 12 12 C 1.53003 * 109.46922 * 239.99933 * 2 1 3 13 13 H 1.08999 * 109.62329 * 300.38079 * 12 2 1 14 14 C 1.53236 * 109.62175 * 180.02562 * 12 2 1 15 15 C 1.52963 * 109.40035 * 185.46800 * 14 12 2 16 16 C 1.52953 * 109.81780 * 63.60102 * 15 14 12 17 17 H 1.09002 * 109.48451 * 56.37994 * 16 15 14 18 18 C 1.53003 * 109.48258 * 176.40891 * 16 15 14 19 19 C 1.53236 * 109.41342 * 296.39048 * 16 15 14 20 20 C 1.51268 * 109.78364 * 60.86090 * 12 2 1 21 21 O 1.20757 * 120.84686 * 351.17728 * 20 12 2 22 22 H 1.09006 * 109.47034 * 60.00090 * 1 2 3 23 23 H 1.09001 * 109.46947 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47359 * 300.00207 * 1 2 3 25 25 H 0.97002 * 119.99977 * 179.97438 * 7 6 4 26 26 H 1.08994 * 109.48064 * 65.48718 * 14 12 2 27 27 H 1.08995 * 109.48126 * 305.44536 * 14 12 2 28 28 H 1.08995 * 109.41079 * 303.48687 * 15 14 12 29 29 H 1.09000 * 109.40860 * 183.70638 * 15 14 12 30 30 H 1.09002 * 109.47208 * 59.96414 * 18 16 15 31 31 H 1.08993 * 109.47062 * 179.97438 * 18 16 15 32 32 H 1.08997 * 109.46656 * 299.97240 * 18 16 15 33 33 H 1.08998 * 109.62088 * 174.34907 * 19 16 15 34 34 H 1.08992 * 109.62559 * 294.92227 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1371 -0.8597 3.5565 8 14 0.6258 1.2798 2.6542 9 1 -0.8021 0.8745 2.6992 10 1 0.9772 1.9953 3.9070 11 1 0.8492 2.1773 1.4923 12 6 2.0400 -0.7213 -1.2493 13 1 1.6725 -1.7474 -1.2552 14 6 3.5723 -0.7239 -1.2525 15 6 4.0767 -1.3236 -2.5662 16 6 3.6445 -0.4415 -3.7386 17 1 4.0083 0.5742 -3.5828 18 6 4.2278 -0.9988 -5.0386 19 6 2.1149 -0.4282 -3.8292 20 6 1.5572 -0.0015 -2.4890 21 8 0.7481 0.8916 -2.4109 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.9031 -0.5281 4.4375 26 1 3.9366 -1.3211 -0.4167 27 1 3.9378 0.2984 -1.1556 28 1 3.6600 -2.3229 -2.6917 29 1 5.1646 -1.3863 -2.5417 30 1 3.8640 -2.0144 -5.1942 31 1 3.9194 -0.3703 -5.8740 32 1 5.3158 -1.0086 -4.9737 33 1 1.7999 0.2768 -4.5985 34 1 1.7540 -1.4271 -4.0742 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238803203.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:28 Heat of formation + Delta-G solvation = -81.125625 kcal Electronic energy + Delta-G solvation = -14544.302648 eV Core-core repulsion = 12247.490578 eV Total energy + Delta-G solvation = -2296.812069 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.21804 -37.79417 -36.59826 -33.94613 -31.78275 -29.84966 -27.28804 -27.07473 -23.20596 -22.58763 -21.07202 -20.02614 -18.79959 -17.04821 -16.69243 -16.17897 -15.71188 -15.31074 -15.10181 -14.78440 -14.40450 -14.03339 -13.71152 -13.29388 -13.18363 -13.01842 -12.70848 -12.55378 -12.28361 -12.04123 -11.67525 -11.59916 -11.45248 -11.40221 -11.25411 -10.95546 -10.68169 -9.91279 -8.30185 -6.30467 1.08522 1.25551 1.31414 1.42410 2.30730 3.05792 3.25012 3.84239 3.90532 3.97261 4.12512 4.30462 4.49095 4.56434 4.62357 4.69525 4.79582 4.80239 4.91264 4.99219 5.02846 5.08995 5.21685 5.27280 5.30381 5.38331 5.45655 5.51263 5.56522 5.67372 5.72474 6.30432 6.66637 6.78590 7.34603 8.85574 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.046454 B = 0.009690 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.596555 B = 2889.008462 C = 3302.810524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.020 3.980 3 H 0.008 0.992 4 C -0.503 4.503 5 H 0.054 0.946 6 C 0.017 3.983 7 N -0.945 5.945 8 Si 0.939 3.061 9 H -0.273 1.273 10 H -0.297 1.297 11 H -0.264 1.264 12 C -0.119 4.119 13 H 0.102 0.898 14 C -0.096 4.096 15 C -0.113 4.113 16 C -0.083 4.083 17 H 0.064 0.936 18 C -0.139 4.139 19 C -0.154 4.154 20 C 0.361 3.639 21 O -0.492 6.492 22 H 0.067 0.933 23 H 0.049 0.951 24 H 0.020 0.980 25 H 0.264 0.736 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 -0.921 -16.981 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.001 3.999 3 H 0.026 0.974 4 C -0.541 4.541 5 H 0.072 0.928 6 C -0.180 4.180 7 N -0.586 5.586 8 Si 0.768 3.232 9 H -0.200 1.200 10 H -0.225 1.225 11 H -0.189 1.189 12 C -0.138 4.138 13 H 0.120 0.880 14 C -0.134 4.134 15 C -0.150 4.150 16 C -0.102 4.102 17 H 0.083 0.917 18 C -0.196 4.196 19 C -0.191 4.191 20 C 0.240 3.760 21 O -0.368 6.368 22 H 0.086 0.914 23 H 0.068 0.932 24 H 0.039 0.961 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.654 -0.454 -16.766 16.980 hybrid contribution -0.608 0.671 1.093 1.419 sum 2.045 0.217 -15.673 15.807 Atomic orbital electron populations 1.22343 0.98611 1.00659 0.99867 1.18985 0.92486 0.95094 0.93357 0.97425 1.21338 1.30348 1.12399 0.89983 0.92772 1.25680 0.97188 0.99201 0.95935 1.70009 1.47915 1.42270 0.98400 0.85995 0.79496 0.81148 0.76556 1.19973 1.22470 1.18895 1.21786 0.98142 1.00835 0.93055 0.88042 1.21415 0.92108 1.00974 0.98876 1.21679 1.01669 0.99513 0.92144 1.21117 0.92318 1.00048 0.96714 0.91713 1.21778 1.01198 1.01567 0.95073 1.22406 0.97551 1.05098 0.94089 1.25551 0.76917 0.79746 0.93811 1.90263 1.29202 1.27846 1.89503 0.91398 0.93218 0.96109 0.92690 0.92042 0.93447 0.90337 0.90100 0.91418 0.91881 0.91629 0.88944 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.41 8.38 71.98 0.60 -6.80 16 2 C 0.02 0.95 1.22 -11.54 -0.01 0.93 16 3 H 0.01 0.40 7.20 -2.39 -0.02 0.38 16 4 C -0.50 -28.36 8.48 25.60 0.22 -28.15 16 5 H 0.05 3.23 6.97 -2.91 -0.02 3.21 16 6 C 0.02 1.01 5.45 84.66 0.46 1.47 16 7 N -0.94 -59.35 13.96 21.45 0.30 -59.05 16 8 Si 0.94 48.16 24.37 68.60 1.67 49.83 16 9 H -0.27 -13.57 6.87 99.48 0.68 -12.89 16 10 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 11 H -0.26 -13.35 6.53 99.48 0.65 -12.70 16 12 C -0.12 -4.50 2.00 -11.28 -0.02 -4.52 16 13 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 14 C -0.10 -3.23 4.87 30.66 0.15 -3.08 16 15 C -0.11 -2.58 5.09 30.57 0.16 -2.42 16 16 C -0.08 -1.67 2.73 -10.73 -0.03 -1.70 16 17 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 18 C -0.14 -1.94 9.20 71.98 0.66 -1.27 16 19 C -0.15 -3.44 5.46 30.12 0.16 -3.28 16 20 C 0.36 12.12 6.40 29.47 0.19 12.30 16 21 O -0.49 -19.94 14.39 -1.44 -0.02 -19.96 16 22 H 0.07 3.03 5.35 -2.38 -0.01 3.02 16 23 H 0.05 2.20 8.14 -2.39 -0.02 2.19 16 24 H 0.02 1.00 3.27 -2.39 -0.01 1.00 16 25 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.06 2.35 6.83 -2.39 -0.02 2.33 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -67.70 259.98 5.47 -62.24 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 0.98 Total: 3.46 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 2.54 Total: -36.52 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.30 Total: -59.05 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.02 Total: -19.96 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 1.67 Total: 49.83 kcal Total: -67.70 5.47 -62.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238803203.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.890 kcal (2) G-P(sol) polarization free energy of solvation -67.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds