Wall clock time and date at job start Mon Mar 30 2020 02:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47246 * 2 1 4 4 C 1.52994 * 109.82679 * 178.17563 * 3 2 1 5 5 C 1.53007 * 117.49826 * 14.18619 * 4 3 2 6 6 C 1.53003 * 117.49815 * 305.56545 * 4 3 2 7 7 C 1.54384 * 109.90673 * 299.11056 * 3 2 1 8 8 C 1.55416 * 102.31120 * 140.83844 * 7 3 2 9 9 C 1.54947 * 100.89304 * 325.98984 * 8 7 3 10 10 H 1.09002 * 110.31150 * 277.35741 * 9 8 7 11 11 C 1.50694 * 110.30930 * 155.28480 * 9 8 7 12 12 H 1.08000 * 119.99900 * 1.39793 * 11 9 8 13 13 C 1.37877 * 120.00507 * 181.39178 * 11 9 8 14 14 N 1.31515 * 119.99623 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00453 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46970 * 269.99682 * 15 13 11 17 17 H 1.48500 * 109.47335 * 29.99836 * 15 13 11 18 18 H 1.48499 * 109.47126 * 150.00095 * 15 13 11 19 19 O 1.43237 * 109.82929 * 57.28705 * 3 2 1 20 20 H 1.09000 * 109.47131 * 306.09004 * 1 2 3 21 21 H 1.08996 * 109.46974 * 66.09906 * 1 2 3 22 22 H 1.09007 * 109.47015 * 186.09432 * 1 2 3 23 23 H 1.08999 * 109.46851 * 239.99528 * 2 1 3 24 24 H 1.09003 * 109.47293 * 120.00112 * 2 1 3 25 25 H 1.09001 * 115.55160 * 159.90158 * 4 3 2 26 26 H 1.08996 * 117.49408 * 0.02562 * 5 4 3 27 27 H 1.08995 * 117.49411 * 145.02207 * 5 4 3 28 28 H 1.08996 * 117.50077 * 214.97734 * 6 4 3 29 29 H 1.09003 * 117.49842 * 0.02562 * 6 4 3 30 30 H 1.09000 * 110.84759 * 259.10517 * 7 3 2 31 31 H 1.09006 * 110.84230 * 22.51492 * 7 3 2 32 32 H 1.09003 * 111.21081 * 208.06800 * 8 7 3 33 33 H 1.08992 * 111.08422 * 83.87059 * 8 7 3 34 34 H 0.97000 * 119.99917 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5693 1.4522 0.0458 5 6 4.2933 0.1374 -0.2513 6 6 4.2470 0.6790 1.1789 7 6 1.5495 2.1735 -1.2682 8 6 1.2072 3.5883 -0.7237 9 6 0.6964 3.2396 0.6970 10 1 -0.3505 2.9382 0.6592 11 6 0.8672 4.4197 1.6185 12 1 1.2755 5.3453 1.2405 13 6 0.5021 4.3178 2.9441 14 7 0.0043 3.1908 3.4043 15 14 0.7131 5.7808 4.0862 16 1 2.0596 5.7310 4.7107 17 1 0.5737 7.0390 3.3099 18 1 -0.3260 5.7353 5.1461 19 8 1.5155 2.1433 1.1337 20 1 -0.3633 0.6054 0.8304 21 1 -0.3633 0.4164 -0.9395 22 1 -0.3633 -1.0219 0.1091 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 4.0438 2.3750 -0.2878 26 1 3.6801 -0.7343 -0.4797 27 1 5.2443 0.1951 -0.7807 28 1 5.1675 1.0930 1.5904 29 1 3.6033 0.1631 1.8915 30 1 2.3406 2.2258 -2.0163 31 1 0.6630 1.6884 -1.6770 32 1 0.4246 4.0607 -1.3175 33 1 2.0966 4.2166 -0.6782 34 1 -0.1057 2.4312 2.8111 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306487672.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:49 Heat of formation + Delta-G solvation = -37.542639 kcal Electronic energy + Delta-G solvation = -14883.699287 eV Core-core repulsion = 12588.777118 eV Total energy + Delta-G solvation = -2294.922169 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.40273 -36.12892 -33.01191 -31.83379 -30.92799 -27.67575 -24.73032 -22.61752 -22.10839 -21.64023 -20.53328 -18.35341 -16.92985 -15.65739 -15.45859 -14.29049 -13.92629 -13.72775 -13.68450 -13.23471 -12.38739 -12.00833 -11.68422 -11.45185 -11.21224 -11.00942 -10.77933 -10.68589 -10.51355 -10.35973 -10.26714 -10.06263 -9.93989 -9.72109 -9.33369 -8.74956 -8.41938 -7.89542 -6.30232 -4.07142 3.46957 3.50195 3.65469 4.18055 4.57401 4.94182 5.05950 5.26739 5.38193 5.45754 5.50904 5.54537 5.70468 5.80308 5.84776 5.96580 6.02688 6.15898 6.18563 6.33464 6.40259 6.44275 6.51320 6.53931 6.57858 6.70837 6.80842 6.84888 6.87981 7.43237 8.16649 8.39900 8.68865 8.95108 9.75265 11.11717 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.034562 B = 0.010732 C = 0.010126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.939510 B = 2608.510238 C = 2764.515161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.134 3.866 4 C -0.141 4.141 5 C -0.191 4.191 6 C -0.165 4.165 7 C -0.148 4.148 8 C -0.139 4.139 9 C 0.193 3.807 10 H 0.019 0.981 11 C -0.607 4.607 12 H 0.053 0.947 13 C 0.032 3.968 14 N -0.893 5.893 15 Si 1.069 2.931 16 H -0.287 1.287 17 H -0.289 1.289 18 H -0.284 1.284 19 O -0.359 6.359 20 H 0.068 0.932 21 H 0.048 0.952 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.386 -4.926 -7.713 10.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C 0.093 3.907 4 C -0.160 4.160 5 C -0.228 4.228 6 C -0.202 4.202 7 C -0.185 4.185 8 C -0.177 4.177 9 C 0.139 3.861 10 H 0.037 0.963 11 C -0.645 4.645 12 H 0.071 0.929 13 C -0.176 4.176 14 N -0.528 5.528 15 Si 0.898 3.102 16 H -0.214 1.214 17 H -0.215 1.215 18 H -0.210 1.210 19 O -0.279 6.279 20 H 0.088 0.912 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.188 -4.480 -5.947 8.543 hybrid contribution 0.359 -0.425 -1.864 1.945 sum 4.547 -4.904 -7.811 10.283 Atomic orbital electron populations 1.21786 0.95838 1.00819 1.02356 1.21874 0.96366 0.96909 1.00984 1.21269 0.89739 0.91824 0.87883 1.22522 0.94993 0.94891 1.03548 1.23081 1.01750 0.98057 0.99942 1.22759 1.02132 1.04012 0.91312 1.23196 1.00631 0.97300 0.97411 1.23198 1.00724 0.95093 0.98637 1.20664 0.89845 0.85415 0.90211 0.96348 1.22015 1.48422 0.96853 0.97178 0.92861 1.25806 0.92880 1.01870 0.97029 1.70637 1.39449 1.03135 1.39549 0.83558 0.76740 0.74347 0.75566 1.21418 1.21518 1.20988 1.88777 1.66675 1.44724 1.27675 0.91249 0.93263 0.93659 0.92213 0.91910 0.88425 0.88639 0.89607 0.89511 0.88667 0.91793 0.91286 0.92194 0.91696 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.45 37.16 0.35 -2.26 16 2 C -0.12 -2.14 3.88 -26.73 -0.10 -2.24 16 3 C 0.13 2.63 0.78 -89.90 -0.07 2.56 16 4 C -0.14 -2.55 5.20 -90.62 -0.47 -3.02 16 5 C -0.19 -2.79 9.67 -26.73 -0.26 -3.05 16 6 C -0.17 -2.81 9.86 -26.73 -0.26 -3.08 16 7 C -0.15 -2.70 5.90 -24.72 -0.15 -2.84 16 8 C -0.14 -2.96 6.54 -24.42 -0.16 -3.12 16 9 C 0.19 5.01 2.62 -26.86 -0.07 4.94 16 10 H 0.02 0.52 7.78 -51.93 -0.40 0.11 16 11 C -0.61 -17.54 8.80 -34.44 -0.30 -17.85 16 12 H 0.05 1.52 7.76 -52.49 -0.41 1.11 16 13 C 0.03 0.95 5.42 -17.82 -0.10 0.85 16 14 N -0.89 -27.66 13.57 55.43 0.75 -26.91 16 15 Si 1.07 25.72 29.90 -169.99 -5.08 20.64 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 O -0.36 -9.06 8.47 -35.23 -0.30 -9.36 16 20 H 0.07 1.43 7.09 -51.93 -0.37 1.06 16 21 H 0.05 0.79 6.36 -51.93 -0.33 0.46 16 22 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 23 H 0.06 0.89 6.88 -51.93 -0.36 0.53 16 24 H 0.06 1.11 6.87 -51.93 -0.36 0.76 16 25 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 26 H 0.10 1.31 5.95 -51.93 -0.31 1.00 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.09 1.73 7.26 -51.93 -0.38 1.35 16 30 H 0.06 1.03 7.82 -51.93 -0.41 0.63 16 31 H 0.07 1.17 5.92 -51.93 -0.31 0.87 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.41 8.04 -51.93 -0.42 0.99 16 34 H 0.28 8.71 6.61 -40.82 -0.27 8.44 16 LS Contribution 266.43 15.07 4.02 4.02 Total: -1.00 -30.85 266.43 -7.43 -38.28 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.22 Total: 2.45 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -1.59 Total: -29.10 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.75 Total: -26.91 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.30 Total: -9.36 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.85 -7.43 -38.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306487672.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.735 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds