Wall clock time and date at job start Mon Mar 30 2020 02:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47246 * 2 1 4 4 C 1.52994 * 109.82679 * 178.17563 * 3 2 1 5 5 C 1.53007 * 117.49826 * 14.18619 * 4 3 2 6 6 C 1.53003 * 117.49815 * 305.56545 * 4 3 2 7 7 C 1.54384 * 109.90673 * 299.11056 * 3 2 1 8 8 C 1.55416 * 102.31120 * 140.83844 * 7 3 2 9 9 C 1.54947 * 100.89304 * 325.98984 * 8 7 3 10 10 H 1.09002 * 110.31150 * 277.35741 * 9 8 7 11 11 C 1.50694 * 110.30930 * 155.28480 * 9 8 7 12 12 H 1.08000 * 119.99900 * 1.39793 * 11 9 8 13 13 C 1.37877 * 120.00507 * 181.39178 * 11 9 8 14 14 N 1.31515 * 119.99623 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00453 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46970 * 269.99682 * 15 13 11 17 17 H 1.48500 * 109.47335 * 29.99836 * 15 13 11 18 18 H 1.48499 * 109.47126 * 150.00095 * 15 13 11 19 19 O 1.43237 * 109.82929 * 57.28705 * 3 2 1 20 20 H 1.09000 * 109.47131 * 306.09004 * 1 2 3 21 21 H 1.08996 * 109.46974 * 66.09906 * 1 2 3 22 22 H 1.09007 * 109.47015 * 186.09432 * 1 2 3 23 23 H 1.08999 * 109.46851 * 239.99528 * 2 1 3 24 24 H 1.09003 * 109.47293 * 120.00112 * 2 1 3 25 25 H 1.09001 * 115.55160 * 159.90158 * 4 3 2 26 26 H 1.08996 * 117.49408 * 0.02562 * 5 4 3 27 27 H 1.08995 * 117.49411 * 145.02207 * 5 4 3 28 28 H 1.08996 * 117.50077 * 214.97734 * 6 4 3 29 29 H 1.09003 * 117.49842 * 0.02562 * 6 4 3 30 30 H 1.09000 * 110.84759 * 259.10517 * 7 3 2 31 31 H 1.09006 * 110.84230 * 22.51492 * 7 3 2 32 32 H 1.09003 * 111.21081 * 208.06800 * 8 7 3 33 33 H 1.08992 * 111.08422 * 83.87059 * 8 7 3 34 34 H 0.97000 * 119.99917 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5693 1.4522 0.0458 5 6 4.2933 0.1374 -0.2513 6 6 4.2470 0.6790 1.1789 7 6 1.5495 2.1735 -1.2682 8 6 1.2072 3.5883 -0.7237 9 6 0.6964 3.2396 0.6970 10 1 -0.3505 2.9382 0.6592 11 6 0.8672 4.4197 1.6185 12 1 1.2755 5.3453 1.2405 13 6 0.5021 4.3178 2.9441 14 7 0.0043 3.1908 3.4043 15 14 0.7131 5.7808 4.0862 16 1 2.0596 5.7310 4.7107 17 1 0.5737 7.0390 3.3099 18 1 -0.3260 5.7353 5.1461 19 8 1.5155 2.1433 1.1337 20 1 -0.3633 0.6054 0.8304 21 1 -0.3633 0.4164 -0.9395 22 1 -0.3633 -1.0219 0.1091 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 4.0438 2.3750 -0.2878 26 1 3.6801 -0.7343 -0.4797 27 1 5.2443 0.1951 -0.7807 28 1 5.1675 1.0930 1.5904 29 1 3.6033 0.1631 1.8915 30 1 2.3406 2.2258 -2.0163 31 1 0.6630 1.6884 -1.6770 32 1 0.4246 4.0607 -1.3175 33 1 2.0966 4.2166 -0.6782 34 1 -0.1057 2.4312 2.8111 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306487672.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:49 Heat of formation + Delta-G solvation = -55.753858 kcal Electronic energy + Delta-G solvation = -14884.488985 eV Core-core repulsion = 12588.777118 eV Total energy + Delta-G solvation = -2295.711867 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.99564 -37.66613 -34.93793 -33.55123 -32.64178 -29.43052 -26.63162 -24.23962 -23.44897 -23.11597 -22.32761 -19.87972 -19.05605 -17.26364 -16.89127 -15.81970 -15.66516 -15.48650 -15.40978 -15.01413 -13.94358 -13.60664 -13.48443 -12.90238 -12.66505 -12.64212 -12.53550 -12.36425 -12.14872 -11.92534 -11.91847 -11.66077 -11.52651 -11.17005 -10.76595 -10.65558 -10.61289 -9.82583 -8.62393 -6.39755 1.50585 1.60177 1.77442 2.56427 2.79435 3.17534 3.56725 3.71605 3.79587 3.95874 4.12703 4.16500 4.21484 4.31800 4.38451 4.54717 4.69386 4.69699 4.79903 4.80806 4.88291 4.97085 5.03420 5.08112 5.21264 5.26204 5.29380 5.34278 5.42637 5.57523 6.01639 6.13551 6.59058 6.87434 7.53378 8.78891 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.034562 B = 0.010732 C = 0.010126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.939510 B = 2608.510238 C = 2764.515161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.118 3.882 4 C -0.168 4.168 5 C -0.147 4.147 6 C -0.184 4.184 7 C -0.135 4.135 8 C -0.134 4.134 9 C 0.189 3.811 10 H -0.011 1.011 11 C -0.626 4.626 12 H 0.050 0.950 13 C -0.021 4.021 14 N -0.921 5.921 15 Si 1.117 2.883 16 H -0.278 1.278 17 H -0.267 1.267 18 H -0.281 1.281 19 O -0.390 6.390 20 H 0.023 0.977 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.097 0.903 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 -5.459 -9.401 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.079 3.921 4 C -0.187 4.187 5 C -0.184 4.184 6 C -0.221 4.221 7 C -0.172 4.172 8 C -0.172 4.172 9 C 0.134 3.866 10 H 0.006 0.994 11 C -0.663 4.663 12 H 0.068 0.932 13 C -0.222 4.222 14 N -0.557 5.557 15 Si 0.938 3.062 16 H -0.204 1.204 17 H -0.192 1.192 18 H -0.206 1.206 19 O -0.311 6.311 20 H 0.042 0.958 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.115 0.885 24 H 0.071 0.929 25 H 0.109 0.891 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.462 -5.022 -7.664 10.667 hybrid contribution -0.018 -0.306 -1.384 1.418 sum 5.444 -5.327 -9.048 11.827 Atomic orbital electron populations 1.21742 0.96147 1.01501 1.01057 1.21870 0.96060 0.95477 1.02224 1.21661 0.90942 0.92727 0.86820 1.22498 0.94002 0.96666 1.05487 1.23176 1.02185 0.95936 0.97075 1.22778 1.02077 1.04817 0.92410 1.23170 1.02134 0.94658 0.97263 1.23090 1.00580 0.97258 0.96264 1.20474 0.88805 0.85028 0.92326 0.99357 1.22451 1.47800 0.98061 0.98024 0.93183 1.27321 0.91999 1.03614 0.99270 1.70763 1.41892 1.03641 1.39402 0.82966 0.77122 0.71999 0.74088 1.20358 1.19208 1.20599 1.88678 1.66706 1.44980 1.30726 0.95794 0.92025 0.91219 0.88479 0.92893 0.89081 0.87157 0.86757 0.88815 0.90669 0.88833 0.89885 0.90907 0.92360 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 9.45 71.98 0.68 -4.29 16 2 C -0.12 -3.89 3.88 30.59 0.12 -3.77 16 3 C 0.12 4.54 0.78 -10.33 -0.01 4.53 16 4 C -0.17 -5.79 5.20 -10.79 -0.06 -5.84 16 5 C -0.15 -3.73 9.67 30.60 0.30 -3.43 16 6 C -0.18 -6.05 9.86 30.60 0.30 -5.75 16 7 C -0.14 -4.63 5.90 31.90 0.19 -4.44 16 8 C -0.13 -5.66 6.54 32.09 0.21 -5.45 16 9 C 0.19 10.09 2.62 30.51 0.08 10.17 16 10 H -0.01 -0.64 7.78 -2.39 -0.02 -0.66 16 11 C -0.63 -37.14 8.80 25.60 0.23 -36.92 16 12 H 0.05 2.91 7.76 -2.91 -0.02 2.88 16 13 C -0.02 -1.25 5.42 84.65 0.46 -0.79 16 14 N -0.92 -59.24 13.57 21.45 0.29 -58.94 16 15 Si 1.12 52.31 29.90 68.60 2.05 54.36 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 O -0.39 -20.31 8.47 -148.98 -1.26 -21.57 16 20 H 0.02 1.00 7.09 -2.39 -0.02 0.98 16 21 H 0.06 1.88 6.36 -2.39 -0.02 1.87 16 22 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 23 H 0.10 2.46 6.88 -2.39 -0.02 2.44 16 24 H 0.05 1.82 6.87 -2.39 -0.02 1.81 16 25 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 26 H 0.11 2.49 5.95 -2.39 -0.01 2.48 16 27 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.07 2.76 7.26 -2.39 -0.02 2.74 16 30 H 0.09 2.67 7.82 -2.39 -0.02 2.65 16 31 H 0.08 2.60 5.92 -2.38 -0.01 2.58 16 32 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.06 2.50 8.04 -2.39 -0.02 2.48 16 34 H 0.26 17.42 6.61 -92.71 -0.61 16.81 16 Total: -1.00 -69.44 266.43 4.80 -64.64 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 1.22 Total: 17.49 kcal Atomic # 6 Polarization: -58.48 SS G_CDS: 2.49 Total: -55.99 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.29 Total: -58.94 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.26 Total: -21.57 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 2.05 Total: 54.36 kcal Total: -69.44 4.80 -64.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306487672.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.891 kcal (2) G-P(sol) polarization free energy of solvation -69.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds