Wall clock time and date at job start Mon Mar 30 2020 02:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.09422 * 2 1 4 4 C 1.54401 * 110.06449 * 238.49537 * 2 1 3 5 5 C 1.54940 * 104.20538 * 217.22251 * 4 2 1 6 6 C 1.55000 * 102.80345 * 37.67232 * 5 4 2 7 7 C 1.53375 * 110.07118 * 121.51039 * 2 1 3 8 8 C 1.53906 * 110.15533 * 238.86298 * 7 2 1 9 9 C 1.55527 * 102.14863 * 142.35260 * 8 7 2 10 10 C 1.54992 * 100.94505 * 326.38577 * 9 8 7 11 11 H 1.09000 * 110.30821 * 277.07296 * 10 9 8 12 12 C 1.50694 * 110.30462 * 155.00723 * 10 9 8 13 13 H 1.08000 * 120.00563 * 1.38018 * 12 10 9 14 14 C 1.37885 * 119.99902 * 181.38182 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 O 1.42674 * 110.88803 * 358.56569 * 7 2 1 21 21 H 1.09008 * 109.46944 * 298.48512 * 1 2 3 22 22 H 1.08993 * 109.47391 * 58.48454 * 1 2 3 23 23 H 1.08997 * 109.47151 * 178.49032 * 1 2 3 24 24 H 1.08995 * 110.48837 * 98.54280 * 4 2 1 25 25 H 1.08995 * 110.59818 * 335.95663 * 4 2 1 26 26 H 1.09001 * 110.74243 * 279.34712 * 5 4 2 27 27 H 1.08999 * 110.74879 * 156.00099 * 5 4 2 28 28 H 1.09006 * 110.50954 * 203.81468 * 6 5 4 29 29 H 1.09002 * 110.50982 * 81.11944 * 6 5 4 30 30 H 1.09002 * 110.90962 * 260.62115 * 8 7 2 31 31 H 1.09003 * 110.90719 * 24.18530 * 8 7 2 32 32 H 1.09001 * 111.20016 * 208.44505 * 9 8 7 33 33 H 1.09001 * 111.07579 * 84.27206 * 9 8 7 34 34 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9045 1.0237 0.0000 4 6 2.0597 -0.7579 -1.2365 5 6 3.3136 -1.5047 -0.7164 6 6 2.8884 -1.9379 0.7099 7 6 2.0563 -0.7529 1.2282 8 6 2.9401 0.1750 2.0806 9 6 2.5678 -0.2567 3.5276 10 6 1.0718 -0.6212 3.3502 11 1 0.4549 0.2759 3.4036 12 6 0.6462 -1.6110 4.4039 13 1 1.3525 -1.9415 5.1511 14 6 -0.6450 -2.0947 4.4140 15 7 -1.5052 -1.6918 3.5044 16 14 -1.1723 -3.3221 5.7196 17 1 -0.9235 -4.7022 5.2310 18 1 -0.3929 -3.0888 6.9620 19 1 -2.6198 -3.1511 6.0039 20 8 0.9793 -1.2132 2.0428 21 1 -0.3633 0.4902 0.9033 22 1 -0.3634 0.5371 -0.8760 23 1 -0.3633 -1.0273 -0.0271 24 1 2.3330 -0.0571 -2.0253 25 1 1.3160 -1.4676 -1.5989 26 1 4.1729 -0.8353 -0.6765 27 1 3.5293 -2.3752 -1.3360 28 1 3.7649 -2.0932 1.3390 29 1 2.2813 -2.8422 0.6693 30 1 3.9968 -0.0025 1.8808 31 1 2.6842 1.2208 1.9097 32 1 2.6904 0.5685 4.2291 33 1 3.1490 -1.1245 3.8395 34 1 -2.4134 -2.0324 3.5113 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306944199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:30 Heat of formation + Delta-G solvation = -67.544643 kcal Electronic energy + Delta-G solvation = -14903.188710 eV Core-core repulsion = 12606.965556 eV Total energy + Delta-G solvation = -2296.223154 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.35990 -35.59179 -32.37154 -31.13178 -30.30456 -28.40126 -25.65659 -24.27702 -22.04477 -20.71724 -19.68939 -18.27319 -16.44995 -15.63507 -15.03249 -14.42730 -14.10487 -13.24350 -13.08334 -13.01503 -12.12880 -11.99509 -11.69511 -11.53774 -11.30577 -10.88053 -10.76894 -10.60371 -10.50310 -10.30483 -10.13020 -10.06813 -9.97617 -9.55015 -9.51566 -9.00599 -8.50750 -7.77091 -5.95534 -4.07724 3.33546 3.39903 3.42410 4.46187 4.96605 5.08642 5.14833 5.35266 5.61802 5.67288 5.72644 5.80648 5.94539 6.02990 6.13046 6.18756 6.25715 6.30975 6.41273 6.52225 6.54900 6.57319 6.71467 6.77495 6.87271 6.88539 6.98031 7.04297 7.28376 7.67606 7.94136 8.33750 8.74855 9.12725 9.62588 11.11680 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.041540 B = 0.010278 C = 0.009621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.880716 B = 2723.530414 C = 2909.684468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.100 4.100 3 H 0.062 0.938 4 C -0.117 4.117 5 C -0.124 4.124 6 C -0.122 4.122 7 C 0.101 3.899 8 C -0.145 4.145 9 C -0.148 4.148 10 C 0.210 3.790 11 H 0.026 0.974 12 C -0.533 4.533 13 H 0.060 0.940 14 C 0.079 3.921 15 N -0.862 5.862 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.274 1.274 19 H -0.286 1.286 20 O -0.339 6.339 21 H 0.061 0.939 22 H 0.030 0.970 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 2.558 -6.542 9.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.119 4.119 3 H 0.080 0.920 4 C -0.155 4.155 5 C -0.161 4.161 6 C -0.160 4.160 7 C 0.060 3.940 8 C -0.182 4.182 9 C -0.186 4.186 10 C 0.155 3.845 11 H 0.043 0.957 12 C -0.571 4.571 13 H 0.078 0.922 14 C -0.127 4.127 15 N -0.498 5.498 16 Si 0.716 3.284 17 H -0.206 1.206 18 H -0.199 1.199 19 H -0.212 1.212 20 O -0.258 6.258 21 H 0.081 0.919 22 H 0.049 0.951 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.644 2.413 -6.663 9.714 hybrid contribution -0.123 -0.529 0.728 0.909 sum 6.521 1.884 -5.935 9.016 Atomic orbital electron populations 1.21486 0.93829 1.02417 1.00066 1.22074 0.97278 0.98009 0.94515 0.91993 1.22430 0.97244 0.98751 0.97073 1.22454 0.97455 0.99331 0.96889 1.22597 0.99069 0.99382 0.94968 1.22086 0.88470 0.91960 0.91494 1.23203 0.99041 0.99041 0.96935 1.23367 1.00653 1.00035 0.94507 1.20517 0.88645 0.93903 0.81440 0.95656 1.21111 0.96187 1.28107 1.11663 0.92158 1.25049 0.96621 0.95852 0.95182 1.70035 1.04473 1.42219 1.33064 0.86674 0.77716 0.81925 0.82091 1.20571 1.19859 1.21192 1.88803 1.44342 1.68521 1.24122 0.91948 0.95091 0.92027 0.92681 0.91691 0.92173 0.92244 0.92208 0.90922 0.92019 0.92002 0.92291 0.91829 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.13 37.16 0.30 -2.06 16 2 C -0.10 -1.79 3.14 -89.69 -0.28 -2.07 16 3 H 0.06 1.04 7.28 -51.93 -0.38 0.66 16 4 C -0.12 -1.79 6.37 -24.97 -0.16 -1.95 16 5 C -0.12 -1.81 6.91 -24.65 -0.17 -1.98 16 6 C -0.12 -2.21 6.01 -25.27 -0.15 -2.37 16 7 C 0.10 2.04 1.14 -89.54 -0.10 1.94 16 8 C -0.14 -2.68 5.93 -24.92 -0.15 -2.83 16 9 C -0.15 -3.14 6.55 -24.34 -0.16 -3.30 16 10 C 0.21 5.47 3.25 -26.83 -0.09 5.39 16 11 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 12 C -0.53 -15.13 8.80 -34.44 -0.30 -15.44 16 13 H 0.06 1.67 7.76 -52.49 -0.41 1.26 16 14 C 0.08 2.25 5.42 -17.82 -0.10 2.15 16 15 N -0.86 -25.60 12.99 55.43 0.72 -24.88 16 16 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 O -0.34 -8.67 8.20 -35.23 -0.29 -8.95 16 21 H 0.06 1.38 7.86 -51.92 -0.41 0.97 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 1.33 7.90 -51.93 -0.41 0.92 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.01 7.84 -51.93 -0.41 0.60 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.03 7.61 -51.93 -0.39 0.64 16 29 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 30 H 0.06 1.00 7.59 -51.93 -0.39 0.61 16 31 H 0.06 1.08 7.45 -51.93 -0.39 0.70 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.35 8.04 -51.93 -0.42 0.94 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 268.27 15.07 4.04 4.04 Total: -1.00 -29.65 268.27 -7.60 -37.25 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -5.70 Total: -1.53 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -1.36 Total: -22.52 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.72 Total: -24.88 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.29 Total: -8.95 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.65 -7.60 -37.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306944199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.298 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds