Wall clock time and date at job start Mon Mar 30 2020 02:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99415 * 2 1 4 4 H 1.48498 * 109.47207 * 269.99632 * 3 2 1 5 5 H 1.48507 * 109.47433 * 30.00068 * 3 2 1 6 6 H 1.48509 * 109.46936 * 149.99953 * 3 2 1 7 7 C 1.37870 * 120.00430 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00004 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.86714 * 59.55722 * 9 7 2 11 11 C 1.54099 * 110.00351 * 180.63973 * 9 7 2 12 12 C 1.54815 * 104.18723 * 121.52900 * 11 9 7 13 13 C 1.55002 * 102.09032 * 20.88011 * 12 11 9 14 14 H 1.09002 * 110.61904 * 81.47860 * 13 12 11 15 15 C 1.52996 * 110.75091 * 204.41120 * 13 12 11 16 16 C 1.53002 * 109.47215 * 182.72924 * 15 13 12 17 17 C 1.53007 * 109.47248 * 180.02562 * 16 15 13 18 18 C 1.52993 * 117.49362 * 243.74496 * 17 16 15 19 19 C 1.52994 * 117.49482 * 175.08593 * 17 16 15 20 20 O 1.43744 * 109.88188 * 298.54992 * 9 7 2 21 21 H 0.97001 * 120.00499 * 0.02562 * 1 2 3 22 22 H 1.08999 * 110.48774 * 240.20195 * 11 9 7 23 23 H 1.08999 * 110.48978 * 2.72098 * 11 9 7 24 24 H 1.08994 * 110.90611 * 262.68885 * 12 11 9 25 25 H 1.08995 * 110.90822 * 139.07665 * 12 11 9 26 26 H 1.08994 * 109.47553 * 302.72931 * 15 13 12 27 27 H 1.09005 * 109.47138 * 62.72947 * 15 13 12 28 28 H 1.09007 * 109.47079 * 299.99844 * 16 15 13 29 29 H 1.08995 * 109.47017 * 59.99998 * 16 15 13 30 30 H 1.08993 * 115.55084 * 29.41512 * 17 16 15 31 31 H 1.09001 * 117.50503 * 359.97438 * 18 17 16 32 32 H 1.09001 * 117.49473 * 145.02042 * 18 17 16 33 33 H 1.09000 * 117.50093 * 214.97238 * 19 17 16 34 34 H 1.09000 * 117.50679 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6158 -2.5601 -0.8841 11 6 2.2417 -3.6795 0.0150 12 6 1.8725 -4.4678 1.2952 13 6 0.4207 -3.9941 1.5609 14 1 -0.2831 -4.5451 0.9370 15 6 0.0623 -4.1485 3.0402 16 6 -1.3954 -3.7375 3.2573 17 6 -1.7538 -3.8913 4.7369 18 6 -2.8299 -4.9164 5.1001 19 6 -3.1398 -3.4195 5.1807 20 8 0.4478 -2.5998 1.1871 21 1 -0.4851 0.8400 -0.0004 22 1 2.1064 -4.3027 -0.8690 23 1 3.2677 -3.3159 0.0710 24 1 2.5279 -4.1954 2.1223 25 1 1.9039 -5.5420 1.1132 26 1 0.1950 -5.1880 3.3397 27 1 0.7125 -3.5117 3.6400 28 1 -1.5283 -2.6978 2.9579 29 1 -2.0457 -4.3743 2.6576 30 1 -0.9288 -3.7582 5.4367 31 1 -3.2830 -5.4809 4.2851 32 1 -2.7131 -5.4573 6.0392 33 1 -3.2269 -2.9764 6.1728 34 1 -3.7963 -2.9991 4.4189 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394584349.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:45 Heat of formation + Delta-G solvation = -43.747072 kcal Electronic energy + Delta-G solvation = -14000.265289 eV Core-core repulsion = 11705.074076 eV Total energy + Delta-G solvation = -2295.191214 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.29344 -37.21847 -33.03342 -31.77051 -30.75921 -27.89736 -24.93812 -22.56976 -22.21416 -20.26784 -20.09214 -19.69567 -16.72483 -15.42436 -15.34366 -14.58336 -14.22579 -14.07299 -13.34776 -13.10774 -12.55449 -12.16079 -11.70855 -11.52944 -11.41352 -11.00503 -10.89795 -10.74229 -10.59591 -10.44000 -10.23072 -10.00883 -9.67387 -9.61161 -9.46032 -9.06444 -8.51330 -7.88950 -5.94975 -4.07404 3.33371 3.39992 3.43380 3.97936 4.46533 4.83312 5.04053 5.11688 5.12552 5.50011 5.50884 5.57184 5.70894 5.73784 5.86326 5.93286 6.02705 6.08948 6.15833 6.22622 6.31396 6.39593 6.49928 6.70230 6.71879 6.74509 6.84962 6.94244 7.00921 7.61765 7.93631 8.32179 8.63946 9.07627 9.62802 11.12497 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030922 B = 0.008165 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.286885 B = 3428.430658 C = 4093.357665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.077 3.923 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.204 3.796 10 H 0.023 0.977 11 C -0.147 4.147 12 C -0.147 4.147 13 C 0.064 3.936 14 H 0.045 0.955 15 C -0.102 4.102 16 C -0.087 4.087 17 C -0.144 4.144 18 C -0.187 4.187 19 C -0.185 4.185 20 O -0.346 6.346 21 H 0.260 0.740 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 -8.530 6.797 11.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.129 4.129 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.079 0.921 9 C 0.148 3.852 10 H 0.040 0.960 11 C -0.185 4.185 12 C -0.185 4.185 13 C 0.005 3.995 14 H 0.063 0.937 15 C -0.139 4.139 16 C -0.124 4.124 17 C -0.163 4.163 18 C -0.224 4.224 19 C -0.222 4.222 20 O -0.265 6.265 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.645 -8.239 6.898 11.066 hybrid contribution 0.531 0.702 -0.073 0.884 sum -2.113 -7.536 6.825 10.385 Atomic orbital electron populations 1.70042 1.05973 1.26391 1.47576 1.25075 0.94772 0.99191 0.93842 0.86652 0.80017 0.83550 0.78049 1.20591 1.21120 1.19815 1.21186 0.92526 0.90185 1.53084 0.92103 1.20255 0.87342 0.92446 0.85171 0.95956 1.23044 1.01817 0.97951 0.95668 1.23082 0.97980 0.98520 0.98902 1.22920 0.94366 0.87916 0.94311 0.93690 1.21499 0.96275 1.00205 0.95927 1.21143 0.96325 1.03044 0.91869 1.22428 0.92185 1.03178 0.98462 1.23025 1.04498 0.92163 1.02695 1.22949 0.99925 0.96879 1.02435 1.89267 1.72175 1.19036 1.46071 0.93050 0.93338 0.91640 0.91582 0.92557 0.92237 0.91530 0.90112 0.92521 0.88120 0.89048 0.89436 0.89283 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.15 12.92 55.43 0.72 -25.43 16 2 C 0.08 2.22 5.41 -17.82 -0.10 2.13 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.32 8.79 -34.44 -0.30 -15.62 16 8 H 0.06 1.70 7.34 -52.49 -0.39 1.31 16 9 C 0.20 5.42 3.25 -27.31 -0.09 5.33 16 10 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 11 C -0.15 -3.16 6.64 -25.20 -0.17 -3.33 16 12 C -0.15 -2.77 6.59 -24.72 -0.16 -2.93 16 13 C 0.06 1.30 3.30 -25.68 -0.08 1.22 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 15 C -0.10 -1.74 4.95 -26.73 -0.13 -1.88 16 16 C -0.09 -1.44 5.43 -26.73 -0.15 -1.58 16 17 C -0.14 -2.02 5.73 -90.62 -0.52 -2.54 16 18 C -0.19 -2.22 10.18 -26.70 -0.27 -2.49 16 19 C -0.18 -2.35 10.25 -26.70 -0.27 -2.62 16 20 O -0.35 -9.14 10.14 -35.23 -0.36 -9.50 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 1.40 7.41 -51.93 -0.38 1.01 16 24 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.60 7.99 -51.93 -0.41 1.19 16 29 H 0.06 0.90 7.88 -51.93 -0.41 0.49 16 30 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.09 1.06 8.03 -51.93 -0.42 0.64 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 280.81 15.07 4.23 4.23 Total: -1.00 -30.56 280.81 -8.46 -39.02 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.79 Total: -0.75 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -2.25 Total: -24.32 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.72 Total: -25.43 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.36 Total: -9.50 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.56 -8.46 -39.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394584349.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.726 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds