Wall clock time and date at job start Mon Mar 30 2020 02:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99415 * 2 1 4 4 H 1.48498 * 109.47207 * 269.99632 * 3 2 1 5 5 H 1.48507 * 109.47433 * 30.00068 * 3 2 1 6 6 H 1.48509 * 109.46936 * 149.99953 * 3 2 1 7 7 C 1.37870 * 120.00430 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00004 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.86714 * 59.55722 * 9 7 2 11 11 C 1.54099 * 110.00351 * 180.63973 * 9 7 2 12 12 C 1.54815 * 104.18723 * 121.52900 * 11 9 7 13 13 C 1.55002 * 102.09032 * 20.88011 * 12 11 9 14 14 H 1.09002 * 110.61904 * 81.47860 * 13 12 11 15 15 C 1.52996 * 110.75091 * 204.41120 * 13 12 11 16 16 C 1.53002 * 109.47215 * 182.72924 * 15 13 12 17 17 C 1.53007 * 109.47248 * 180.02562 * 16 15 13 18 18 C 1.52993 * 117.49362 * 243.74496 * 17 16 15 19 19 C 1.52994 * 117.49482 * 175.08593 * 17 16 15 20 20 O 1.43744 * 109.88188 * 298.54992 * 9 7 2 21 21 H 0.97001 * 120.00499 * 0.02562 * 1 2 3 22 22 H 1.08999 * 110.48774 * 240.20195 * 11 9 7 23 23 H 1.08999 * 110.48978 * 2.72098 * 11 9 7 24 24 H 1.08994 * 110.90611 * 262.68885 * 12 11 9 25 25 H 1.08995 * 110.90822 * 139.07665 * 12 11 9 26 26 H 1.08994 * 109.47553 * 302.72931 * 15 13 12 27 27 H 1.09005 * 109.47138 * 62.72947 * 15 13 12 28 28 H 1.09007 * 109.47079 * 299.99844 * 16 15 13 29 29 H 1.08995 * 109.47017 * 59.99998 * 16 15 13 30 30 H 1.08993 * 115.55084 * 29.41512 * 17 16 15 31 31 H 1.09001 * 117.50503 * 359.97438 * 18 17 16 32 32 H 1.09001 * 117.49473 * 145.02042 * 18 17 16 33 33 H 1.09000 * 117.50093 * 214.97238 * 19 17 16 34 34 H 1.09000 * 117.50679 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6158 -2.5601 -0.8841 11 6 2.2417 -3.6795 0.0150 12 6 1.8725 -4.4678 1.2952 13 6 0.4207 -3.9941 1.5609 14 1 -0.2831 -4.5451 0.9370 15 6 0.0623 -4.1485 3.0402 16 6 -1.3954 -3.7375 3.2573 17 6 -1.7538 -3.8913 4.7369 18 6 -2.8299 -4.9164 5.1001 19 6 -3.1398 -3.4195 5.1807 20 8 0.4478 -2.5998 1.1871 21 1 -0.4851 0.8400 -0.0004 22 1 2.1064 -4.3027 -0.8690 23 1 3.2677 -3.3159 0.0710 24 1 2.5279 -4.1954 2.1223 25 1 1.9039 -5.5420 1.1132 26 1 0.1950 -5.1880 3.3397 27 1 0.7125 -3.5117 3.6400 28 1 -1.5283 -2.6978 2.9579 29 1 -2.0457 -4.3743 2.6576 30 1 -0.9288 -3.7582 5.4367 31 1 -3.2830 -5.4809 4.2851 32 1 -2.7131 -5.4573 6.0392 33 1 -3.2269 -2.9764 6.1728 34 1 -3.7963 -2.9991 4.4189 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394584349.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:45 Heat of formation + Delta-G solvation = -61.278863 kcal Electronic energy + Delta-G solvation = -14001.025525 eV Core-core repulsion = 11705.074076 eV Total energy + Delta-G solvation = -2295.951449 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.00701 -38.40036 -34.95845 -33.48776 -32.54695 -29.69494 -26.76689 -24.20506 -23.19855 -21.92917 -21.63492 -21.09283 -18.84828 -17.04105 -16.61119 -16.46543 -15.90924 -15.65141 -14.85291 -14.68379 -14.12314 -14.01800 -13.42063 -13.07985 -12.82135 -12.46989 -12.41498 -12.32314 -12.20441 -11.98123 -11.87666 -11.62300 -11.39620 -11.01816 -10.89579 -10.70792 -10.63181 -9.90340 -8.14265 -6.35055 1.38891 1.40964 1.51591 2.40395 2.94980 3.06831 3.62124 3.67546 4.03383 4.07404 4.11792 4.17492 4.28091 4.33669 4.55115 4.61900 4.68956 4.78454 4.79967 4.92719 5.03100 5.07184 5.11197 5.17865 5.22321 5.28981 5.35047 5.45770 5.51871 5.55899 5.73488 6.19456 6.57874 7.02721 7.40677 8.93802 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030922 B = 0.008165 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.286885 B = 3428.430658 C = 4093.357665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.019 3.981 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.064 0.936 9 C 0.194 3.806 10 H -0.016 1.016 11 C -0.142 4.142 12 C -0.134 4.134 13 C 0.051 3.949 14 H 0.048 0.952 15 C -0.093 4.093 16 C -0.081 4.081 17 C -0.162 4.162 18 C -0.165 4.165 19 C -0.191 4.191 20 O -0.383 6.383 21 H 0.260 0.740 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.580 -9.822 8.037 12.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.082 0.918 9 C 0.138 3.862 10 H 0.002 0.998 11 C -0.180 4.180 12 C -0.172 4.172 13 C -0.007 4.007 14 H 0.065 0.935 15 C -0.130 4.130 16 C -0.119 4.119 17 C -0.180 4.180 18 C -0.201 4.201 19 C -0.228 4.228 20 O -0.303 6.303 21 H 0.069 0.931 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.839 -9.547 8.136 12.677 hybrid contribution 0.230 1.045 -0.481 1.173 sum -1.609 -8.502 7.654 11.553 Atomic orbital electron populations 1.70195 1.07744 1.27299 1.48857 1.25999 0.95657 1.03202 0.93360 0.85517 0.78688 0.78569 0.78585 1.19355 1.20892 1.18866 1.21626 0.92958 0.91693 1.52951 0.91801 1.20176 0.87806 0.94073 0.84149 0.99849 1.22941 1.00176 0.96656 0.98202 1.23048 0.96314 1.00426 0.97388 1.23283 0.95892 0.85158 0.96368 0.93457 1.21472 0.96039 1.02108 0.93397 1.21010 0.96468 1.00216 0.94162 1.22322 0.93210 1.05978 0.96513 1.23111 1.01792 0.91537 1.03691 1.23035 0.98666 0.98196 1.02889 1.89185 1.72452 1.23032 1.45640 0.93076 0.91426 0.91667 0.91134 0.88516 0.88517 0.92711 0.94681 0.92083 0.87557 0.88613 0.87164 0.87789 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.67 12.92 21.45 0.28 -56.39 16 2 C 0.02 1.15 5.41 84.65 0.46 1.61 16 3 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.55 -32.63 8.79 25.60 0.22 -32.41 16 8 H 0.06 3.60 7.34 -2.91 -0.02 3.57 16 9 C 0.19 10.63 3.25 30.22 0.10 10.73 16 10 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 11 C -0.14 -5.99 6.64 31.59 0.21 -5.78 16 12 C -0.13 -4.74 6.59 31.90 0.21 -4.53 16 13 C 0.05 2.06 3.30 31.28 0.10 2.16 16 14 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 15 C -0.09 -3.08 4.95 30.59 0.15 -2.93 16 16 C -0.08 -2.70 5.43 30.60 0.17 -2.54 16 17 C -0.16 -4.32 5.73 -10.80 -0.06 -4.38 16 18 C -0.16 -3.46 10.18 30.62 0.31 -3.15 16 19 C -0.19 -4.59 10.25 30.62 0.31 -4.28 16 20 O -0.38 -20.89 10.14 -148.98 -1.51 -22.41 16 21 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 22 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 23 H 0.06 2.72 7.41 -2.39 -0.02 2.70 16 24 H 0.07 2.43 8.06 -2.39 -0.02 2.41 16 25 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.03 1.46 7.99 -2.38 -0.02 1.44 16 29 H 0.06 1.92 7.88 -2.39 -0.02 1.90 16 30 H 0.11 2.70 8.07 -2.39 -0.02 2.68 16 31 H 0.10 1.94 8.03 -2.39 -0.02 1.93 16 32 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -68.16 280.81 4.02 -64.14 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.04 Total: 12.79 kcal Atomic # 6 Polarization: -47.68 SS G_CDS: 2.19 Total: -45.50 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.28 Total: -56.39 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.51 Total: -22.41 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -68.16 4.02 -64.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394584349.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.863 kcal (2) G-P(sol) polarization free energy of solvation -68.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds