Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99505 * 2 1 4 4 H 1.48496 * 109.47366 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47370 * 299.99948 * 3 2 1 6 6 H 1.48503 * 109.47128 * 59.99581 * 3 2 1 7 7 C 1.37872 * 120.00548 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00196 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.47131 * 59.99342 * 9 7 2 11 11 C 1.53003 * 109.47222 * 300.00088 * 9 7 2 12 12 C 1.53002 * 109.46706 * 299.99671 * 11 9 7 13 13 C 1.52999 * 109.47128 * 299.99773 * 12 11 9 14 14 C 1.53000 * 109.46784 * 60.00463 * 13 12 11 15 15 C 1.52998 * 109.47079 * 299.99357 * 14 13 12 16 16 H 1.08997 * 109.47384 * 300.00489 * 15 14 13 17 17 C 1.52997 * 109.47480 * 180.02562 * 15 14 13 18 18 C 1.52998 * 117.50107 * 128.74683 * 17 15 14 19 19 C 1.53007 * 117.49952 * 60.08742 * 17 15 14 20 20 H 0.96999 * 120.01022 * 0.02562 * 1 2 3 21 21 H 0.96700 * 114.00311 * 300.00591 * 10 9 7 22 22 H 1.08999 * 109.47269 * 59.99559 * 11 9 7 23 23 H 1.08997 * 109.47258 * 179.97438 * 11 9 7 24 24 H 1.08997 * 109.47213 * 60.00032 * 12 11 9 25 25 H 1.08999 * 109.46874 * 179.97438 * 12 11 9 26 26 H 1.08997 * 109.46819 * 180.02562 * 13 12 11 27 27 H 1.08997 * 109.47286 * 300.00215 * 13 12 11 28 28 H 1.08997 * 109.47412 * 59.99829 * 14 13 12 29 29 H 1.09009 * 109.46884 * 179.97438 * 14 13 12 30 30 H 1.08999 * 115.55120 * 274.42275 * 17 15 14 31 31 H 1.09001 * 117.49665 * 0.02562 * 18 17 15 32 32 H 1.08996 * 117.49750 * 145.02258 * 18 17 15 33 33 H 1.08999 * 117.50364 * 214.98640 * 19 17 15 34 34 H 1.09003 * 117.49231 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8901 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2513 -2.4991 0.0005 10 8 0.4301 -2.5751 -1.1665 11 6 0.3712 -2.5800 1.2495 12 6 1.2504 -2.4986 2.4990 13 6 2.2447 -3.6615 2.4996 14 6 3.1247 -3.5805 1.2506 15 6 2.2456 -3.6620 0.0011 16 1 1.7007 -4.6059 0.0011 17 6 3.1256 -3.5816 -1.2478 18 6 2.9385 -4.6622 -2.3147 19 6 4.1899 -4.6652 -1.4331 20 1 -0.4851 0.8399 -0.0004 21 1 -0.2254 -1.8673 -1.2330 22 1 -0.3372 -1.7516 1.2491 23 1 -0.1741 -3.5238 1.2492 24 1 1.7953 -1.5546 2.4990 25 1 0.6233 -2.5558 3.3887 26 1 2.8707 -3.6037 3.3900 27 1 1.6998 -4.6055 2.4996 28 1 3.6696 -2.6365 1.2507 29 1 3.8335 -4.4088 1.2513 30 1 3.3679 -2.5749 -1.5883 31 1 2.1880 -5.4302 -2.1269 32 1 3.0579 -4.3665 -3.3569 33 1 5.1321 -4.3715 -1.8957 34 1 4.2632 -5.4350 -0.6649 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695992412.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = -49.450941 kcal Electronic energy + Delta-G solvation = -15091.854059 eV Core-core repulsion = 12796.415507 eV Total energy + Delta-G solvation = -2295.438552 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.67410 -35.77403 -33.97773 -31.98195 -29.44366 -28.34485 -25.02914 -22.54104 -21.80560 -20.74368 -19.27675 -18.77228 -16.26186 -15.41753 -14.99860 -14.31253 -13.78054 -13.46861 -13.18238 -12.49142 -12.24242 -11.84575 -11.54506 -11.26433 -11.00694 -10.89637 -10.84951 -10.55523 -10.29778 -10.15224 -9.80327 -9.67100 -9.57377 -9.48680 -8.90401 -8.65654 -8.44062 -7.84599 -6.07349 -4.15182 3.24777 3.34174 3.37612 4.37354 4.58227 5.16415 5.37608 5.59180 5.66980 5.81042 5.86692 5.92472 6.15899 6.21474 6.37871 6.46587 6.51419 6.55352 6.64296 6.71835 6.73113 6.80521 6.85886 6.98656 7.08723 7.33334 7.38136 7.46310 7.62829 7.75685 8.10038 8.33934 8.85706 9.51010 9.68088 10.95569 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.014145 C = 0.012255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.667026 B = 1979.080049 C = 2284.194260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.258 3.742 10 O -0.591 6.591 11 C -0.137 4.137 12 C -0.102 4.102 13 C -0.114 4.114 14 C -0.100 4.100 15 C -0.034 4.034 16 H 0.045 0.955 17 C -0.104 4.104 18 C -0.179 4.179 19 C -0.203 4.203 20 H 0.263 0.737 21 H 0.377 0.623 22 H 0.092 0.908 23 H 0.019 0.981 24 H 0.071 0.929 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.864 -5.043 1.457 6.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.219 3.781 10 O -0.400 6.400 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.152 4.152 14 C -0.137 4.137 15 C -0.053 4.053 16 H 0.064 0.936 17 C -0.122 4.122 18 C -0.216 4.216 19 C -0.240 4.240 20 H 0.074 0.926 21 H 0.227 0.773 22 H 0.110 0.890 23 H 0.038 0.962 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.129 0.871 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.093 -5.451 1.348 6.949 hybrid contribution 0.073 1.445 0.134 1.453 sum 4.166 -4.006 1.482 5.967 Atomic orbital electron populations 1.69597 1.05833 1.26815 1.51920 1.24962 0.94869 0.99078 0.94432 0.86570 0.80242 0.83832 0.77539 1.19783 1.21069 1.21104 1.21759 0.93563 0.90842 1.49246 0.92040 1.18542 0.86432 0.91167 0.81998 1.86126 1.52773 1.54907 1.46177 1.22137 0.99420 0.99991 0.95942 1.21345 0.97070 0.98557 0.96981 1.21512 0.97887 0.98685 0.97088 1.21428 0.97202 1.01259 0.93809 1.20572 0.94786 0.98193 0.91738 0.93649 1.22279 0.98167 0.94684 0.97086 1.22816 0.99344 1.03254 0.96222 1.22950 0.93456 1.04013 1.03567 0.92640 0.77292 0.89000 0.96183 0.91072 0.94822 0.93593 0.93586 0.91012 0.93860 0.87131 0.89755 0.89946 0.89998 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.78 9.68 55.43 0.54 -23.25 16 2 C 0.07 1.73 5.22 -17.82 -0.09 1.64 16 3 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.52 -13.21 5.32 -34.44 -0.18 -13.39 16 8 H 0.06 1.59 6.06 -52.48 -0.32 1.27 16 9 C 0.26 6.24 0.53 -91.77 -0.05 6.19 16 10 O -0.59 -15.39 12.59 -35.23 -0.44 -15.83 16 11 C -0.14 -3.21 4.86 -26.73 -0.13 -3.34 16 12 C -0.10 -2.12 5.70 -26.73 -0.15 -2.28 16 13 C -0.11 -2.09 5.92 -26.73 -0.16 -2.25 16 14 C -0.10 -1.91 4.82 -26.73 -0.13 -2.04 16 15 C -0.03 -0.73 1.84 -90.62 -0.17 -0.90 16 16 H 0.05 0.98 7.90 -51.93 -0.41 0.57 16 17 C -0.10 -2.10 4.49 -90.62 -0.41 -2.51 16 18 C -0.18 -3.22 10.18 -26.69 -0.27 -3.50 16 19 C -0.20 -3.38 9.74 -26.69 -0.26 -3.64 16 20 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 21 H 0.38 10.05 7.15 45.56 0.33 10.38 16 22 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 1.60 7.22 -51.93 -0.37 1.23 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 29 H 0.04 0.74 7.29 -51.92 -0.38 0.36 16 30 H 0.11 2.47 6.82 -51.93 -0.35 2.12 16 31 H 0.08 1.50 8.05 -51.93 -0.42 1.08 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.32 7.61 -51.93 -0.40 0.92 16 LS Contribution 259.70 15.07 3.91 3.91 Total: -1.00 -26.06 259.70 -7.67 -33.73 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -4.65 Total: 11.89 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -2.00 Total: -26.00 kcal Atomic # 7 Polarization: -23.78 SS G_CDS: 0.54 Total: -23.25 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.44 Total: -15.83 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.06 -7.67 -33.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695992412.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.726 kcal (2) G-P(sol) polarization free energy of solvation -26.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds