Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99505 * 2 1 4 4 H 1.48496 * 109.47366 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47370 * 299.99948 * 3 2 1 6 6 H 1.48503 * 109.47128 * 59.99581 * 3 2 1 7 7 C 1.37872 * 120.00548 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00196 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.47131 * 59.99342 * 9 7 2 11 11 C 1.53003 * 109.47222 * 300.00088 * 9 7 2 12 12 C 1.53002 * 109.46706 * 299.99671 * 11 9 7 13 13 C 1.52999 * 109.47128 * 299.99773 * 12 11 9 14 14 C 1.53000 * 109.46784 * 60.00463 * 13 12 11 15 15 C 1.52998 * 109.47079 * 299.99357 * 14 13 12 16 16 H 1.08997 * 109.47384 * 300.00489 * 15 14 13 17 17 C 1.52997 * 109.47480 * 180.02562 * 15 14 13 18 18 C 1.52998 * 117.50107 * 128.74683 * 17 15 14 19 19 C 1.53007 * 117.49952 * 60.08742 * 17 15 14 20 20 H 0.96999 * 120.01022 * 0.02562 * 1 2 3 21 21 H 0.96700 * 114.00311 * 300.00591 * 10 9 7 22 22 H 1.08999 * 109.47269 * 59.99559 * 11 9 7 23 23 H 1.08997 * 109.47258 * 179.97438 * 11 9 7 24 24 H 1.08997 * 109.47213 * 60.00032 * 12 11 9 25 25 H 1.08999 * 109.46874 * 179.97438 * 12 11 9 26 26 H 1.08997 * 109.46819 * 180.02562 * 13 12 11 27 27 H 1.08997 * 109.47286 * 300.00215 * 13 12 11 28 28 H 1.08997 * 109.47412 * 59.99829 * 14 13 12 29 29 H 1.09009 * 109.46884 * 179.97438 * 14 13 12 30 30 H 1.08999 * 115.55120 * 274.42275 * 17 15 14 31 31 H 1.09001 * 117.49665 * 0.02562 * 18 17 15 32 32 H 1.08996 * 117.49750 * 145.02258 * 18 17 15 33 33 H 1.08999 * 117.50364 * 214.98640 * 19 17 15 34 34 H 1.09003 * 117.49231 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8901 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2513 -2.4991 0.0005 10 8 0.4301 -2.5751 -1.1665 11 6 0.3712 -2.5800 1.2495 12 6 1.2504 -2.4986 2.4990 13 6 2.2447 -3.6615 2.4996 14 6 3.1247 -3.5805 1.2506 15 6 2.2456 -3.6620 0.0011 16 1 1.7007 -4.6059 0.0011 17 6 3.1256 -3.5816 -1.2478 18 6 2.9385 -4.6622 -2.3147 19 6 4.1899 -4.6652 -1.4331 20 1 -0.4851 0.8399 -0.0004 21 1 -0.2254 -1.8673 -1.2330 22 1 -0.3372 -1.7516 1.2491 23 1 -0.1741 -3.5238 1.2492 24 1 1.7953 -1.5546 2.4990 25 1 0.6233 -2.5558 3.3887 26 1 2.8707 -3.6037 3.3900 27 1 1.6998 -4.6055 2.4996 28 1 3.6696 -2.6365 1.2507 29 1 3.8335 -4.4088 1.2513 30 1 3.3679 -2.5749 -1.5883 31 1 2.1880 -5.4302 -2.1269 32 1 3.0579 -4.3665 -3.3569 33 1 5.1321 -4.3715 -1.8957 34 1 4.2632 -5.4350 -0.6649 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695992412.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = -64.184801 kcal Electronic energy + Delta-G solvation = -15092.492967 eV Core-core repulsion = 12796.415507 eV Total energy + Delta-G solvation = -2296.077460 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.36656 -37.36031 -35.77657 -33.99324 -31.08991 -30.12966 -26.97257 -24.12477 -23.28791 -22.37139 -20.87612 -20.55954 -18.19189 -17.14054 -16.87601 -16.00625 -15.42749 -15.13508 -14.81827 -14.26104 -13.91443 -13.57850 -13.25995 -13.15009 -12.73845 -12.56356 -12.37819 -12.29357 -12.06396 -11.93964 -11.50290 -11.27500 -11.24123 -11.11804 -10.56448 -10.38036 -10.31379 -9.79283 -8.05585 -6.18430 1.38688 1.43679 1.52048 2.43965 3.12756 3.17682 3.85915 4.02232 4.19672 4.29920 4.35971 4.41860 4.55249 4.76610 4.82013 4.87039 4.96883 5.02760 5.03865 5.07790 5.19085 5.24184 5.32723 5.37609 5.51153 5.61856 5.68845 5.71483 5.74395 5.88001 6.18277 6.39003 6.85805 7.48991 7.61481 8.95554 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.014145 C = 0.012255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.667026 B = 1979.080049 C = 2284.194260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.025 3.975 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.245 3.755 10 O -0.602 6.602 11 C -0.135 4.135 12 C -0.099 4.099 13 C -0.110 4.110 14 C -0.096 4.096 15 C -0.031 4.031 16 H 0.041 0.959 17 C -0.136 4.136 18 C -0.182 4.182 19 C -0.169 4.169 20 H 0.263 0.737 21 H 0.369 0.631 22 H 0.063 0.937 23 H 0.020 0.980 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -6.175 2.101 8.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.173 4.173 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.207 3.793 10 O -0.410 6.410 11 C -0.173 4.173 12 C -0.136 4.136 13 C -0.147 4.147 14 C -0.133 4.133 15 C -0.050 4.050 16 H 0.060 0.940 17 C -0.154 4.154 18 C -0.219 4.219 19 C -0.206 4.206 20 H 0.072 0.928 21 H 0.218 0.782 22 H 0.081 0.919 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.630 -6.592 1.996 8.896 hybrid contribution -0.431 1.789 -0.099 1.843 sum 5.199 -4.803 1.897 7.328 Atomic orbital electron populations 1.69705 1.06656 1.27173 1.52506 1.25561 0.95566 1.01603 0.94586 0.85744 0.79280 0.80768 0.77222 1.19501 1.21306 1.20917 1.21880 0.93268 0.91718 1.48754 0.92689 1.18827 0.86824 0.92171 0.81520 1.86126 1.52824 1.54530 1.47505 1.22055 0.99329 0.98722 0.97220 1.21285 0.97341 0.98848 0.96173 1.21496 0.97525 0.97813 0.97894 1.21413 0.97270 1.01533 0.93074 1.20524 0.94545 0.96350 0.93562 0.94024 1.22085 1.01125 0.94391 0.97797 1.22891 1.00530 1.02112 0.96328 1.23026 0.93152 1.01699 1.02730 0.92780 0.78205 0.91858 0.96083 0.93242 0.93224 0.90790 0.92356 0.92664 0.90955 0.90071 0.89667 0.89323 0.88164 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.58 9.68 21.45 0.21 -49.37 16 2 C 0.03 1.31 5.22 84.65 0.44 1.75 16 3 Si 0.94 42.60 29.54 68.60 2.03 44.63 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.52 -26.83 5.32 25.60 0.14 -26.69 16 8 H 0.05 2.87 6.06 -2.91 -0.02 2.85 16 9 C 0.25 11.97 0.53 -11.54 -0.01 11.97 16 10 O -0.60 -32.05 12.59 -148.98 -1.88 -33.93 16 11 C -0.13 -6.37 4.86 30.60 0.15 -6.22 16 12 C -0.10 -4.01 5.70 30.59 0.17 -3.84 16 13 C -0.11 -3.72 5.92 30.59 0.18 -3.54 16 14 C -0.10 -3.43 4.82 30.59 0.15 -3.29 16 15 C -0.03 -1.30 1.84 -10.80 -0.02 -1.32 16 16 H 0.04 1.74 7.90 -2.39 -0.02 1.72 16 17 C -0.14 -5.34 4.49 -10.79 -0.05 -5.39 16 18 C -0.18 -6.20 10.18 30.62 0.31 -5.89 16 19 C -0.17 -5.10 9.74 30.62 0.30 -4.80 16 20 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 21 H 0.37 20.39 7.15 -74.06 -0.53 19.86 16 22 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.05 2.20 7.22 -2.39 -0.02 2.19 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.05 2.17 6.62 -2.39 -0.02 2.15 16 29 H 0.07 2.18 7.29 -2.38 -0.02 2.16 16 30 H 0.08 3.66 6.82 -2.39 -0.02 3.65 16 31 H 0.08 2.88 8.05 -2.39 -0.02 2.86 16 32 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.10 2.73 7.61 -2.39 -0.02 2.71 16 Total: -1.00 -55.58 259.70 2.67 -52.91 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: 0.55 Total: 33.01 kcal Atomic # 6 Polarization: -49.01 SS G_CDS: 1.76 Total: -47.25 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.21 Total: -49.37 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.88 Total: -33.93 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -55.58 2.67 -52.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695992412.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.277 kcal (2) G-P(sol) polarization free energy of solvation -55.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds