Wall clock time and date at job start Mon Mar 30 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 115.55005 * 2 1 4 4 C 1.53077 * 117.51406 * 214.27248 * 2 1 3 5 5 C 1.52990 * 59.98586 * 252.52835 * 4 2 1 6 6 H 1.09001 * 117.50032 * 252.50163 * 5 4 2 7 7 C 1.53001 * 117.50189 * 107.50534 * 5 4 2 8 8 H 1.08997 * 110.35136 * 351.93993 * 7 5 4 9 9 C 1.54940 * 110.31180 * 114.08464 * 7 5 4 10 10 C 1.55300 * 100.94415 * 155.36050 * 9 7 5 11 11 C 1.54377 * 102.25502 * 325.86750 * 10 9 7 12 12 H 1.09000 * 109.83189 * 261.84669 * 11 10 9 13 13 C 1.50695 * 109.83610 * 140.86829 * 11 10 9 14 14 H 1.08006 * 119.99951 * 0.41145 * 13 11 10 15 15 C 1.37873 * 120.00566 * 180.41294 * 13 11 10 16 16 N 1.31524 * 119.99732 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00521 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47111 * 89.99741 * 17 15 13 19 19 H 1.48500 * 109.47304 * 210.00251 * 17 15 13 20 20 H 1.48506 * 109.46960 * 330.00134 * 17 15 13 21 21 O 1.43245 * 107.58529 * 21.35358 * 11 10 9 22 22 H 1.08995 * 109.47237 * 274.33110 * 1 2 3 23 23 H 1.09000 * 109.47033 * 34.33485 * 1 2 3 24 24 H 1.09003 * 109.46976 * 154.33092 * 1 2 3 25 25 H 1.08997 * 109.47023 * 205.66868 * 3 2 1 26 26 H 1.08999 * 109.46676 * 325.66617 * 3 2 1 27 27 H 1.09002 * 109.46644 * 85.66895 * 3 2 1 28 28 H 1.09001 * 117.48856 * 145.03490 * 4 2 1 29 29 H 1.09002 * 117.51180 * 0.02562 * 4 2 1 30 30 H 1.09007 * 111.12756 * 37.44000 * 9 7 5 31 31 H 1.09003 * 111.16152 * 273.29689 * 9 7 5 32 32 H 1.09006 * 110.85287 * 207.67375 * 10 9 7 33 33 H 1.09007 * 110.84948 * 84.05944 * 10 9 7 34 34 H 0.96997 * 119.99892 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2372 -1.1219 -0.7645 5 6 2.2364 -1.1208 0.7654 6 1 3.1712 -0.8747 1.2690 7 6 1.3588 -2.1557 1.4722 8 1 0.7304 -2.6767 0.7498 9 6 2.2391 -3.1677 2.2477 10 6 1.2426 -3.6523 3.3357 11 6 0.4145 -2.3791 3.6121 12 1 0.7958 -1.8756 4.5005 13 6 -1.0339 -2.7443 3.8114 14 1 -1.3428 -3.7777 3.7561 15 6 -1.9648 -1.7593 4.0645 16 7 -1.5888 -0.5007 4.1314 17 14 -3.7603 -2.2119 4.3108 18 1 -4.0118 -2.4731 5.7508 19 1 -4.6206 -1.0913 3.8533 20 1 -4.0758 -3.4313 3.5241 21 8 0.5469 -1.5209 2.4728 22 1 -0.3633 0.0776 1.0247 23 1 -0.3633 0.8486 -0.5796 24 1 -0.3633 -0.9263 -0.4452 25 1 3.1823 1.3087 -0.4451 26 1 1.5809 2.0741 -0.5796 27 1 2.2766 1.7416 1.0248 28 1 3.1724 -0.8761 -1.2676 29 1 1.6124 -1.8598 -1.2679 30 1 3.1017 -2.6750 2.6965 31 1 2.5506 -3.9915 1.6054 32 1 1.7728 -3.9725 4.2327 33 1 0.6084 -4.4519 2.9525 34 1 -2.2437 0.1924 4.3090 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700687934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:10 Heat of formation + Delta-G solvation = -37.316946 kcal Electronic energy + Delta-G solvation = -14555.231954 eV Core-core repulsion = 12260.319572 eV Total energy + Delta-G solvation = -2294.912382 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.84244 -36.82871 -32.47669 -30.82362 -29.53125 -27.70662 -26.92653 -24.62128 -21.87155 -20.17245 -20.08571 -18.10453 -16.43624 -15.36822 -15.07037 -14.42083 -13.94872 -13.52970 -13.22928 -12.66940 -12.32450 -12.04614 -11.71078 -11.68940 -11.55031 -11.30022 -10.88131 -10.71319 -10.54418 -10.41049 -10.35365 -10.12146 -9.68588 -9.57509 -9.10458 -8.76041 -8.46440 -7.72529 -5.92050 -4.05543 3.33125 3.40135 3.43144 4.14016 4.47431 5.01928 5.08128 5.29748 5.35877 5.53460 5.60557 5.71851 5.80433 5.91739 6.03733 6.09195 6.10737 6.32781 6.33792 6.40626 6.49623 6.53182 6.56974 6.68054 6.74137 6.77294 6.83710 6.98927 7.26352 7.72767 7.94841 8.36390 8.71139 9.13367 9.65520 11.14111 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.010617 C = 0.008833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.138996 B = 2636.740813 C = 3169.023534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.110 4.110 3 C -0.111 4.111 4 C -0.180 4.180 5 C -0.137 4.137 6 H 0.097 0.903 7 C 0.109 3.891 8 H 0.049 0.951 9 C -0.151 4.151 10 C -0.146 4.146 11 C 0.205 3.795 12 H 0.036 0.964 13 C -0.543 4.543 14 H 0.057 0.943 15 C 0.080 3.920 16 N -0.862 5.862 17 Si 0.886 3.114 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 O -0.346 6.346 22 H 0.091 0.909 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.763 -0.372 -7.031 9.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.110 4.110 3 C -0.168 4.168 4 C -0.217 4.217 5 C -0.155 4.155 6 H 0.115 0.885 7 C 0.051 3.949 8 H 0.067 0.933 9 C -0.188 4.188 10 C -0.184 4.184 11 C 0.150 3.850 12 H 0.053 0.947 13 C -0.581 4.581 14 H 0.075 0.925 15 C -0.125 4.125 16 N -0.498 5.498 17 Si 0.713 3.287 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 O -0.266 6.266 22 H 0.110 0.890 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.608 0.022 -7.011 9.635 hybrid contribution -0.846 -0.502 0.129 0.992 sum 5.762 -0.479 -6.882 8.989 Atomic orbital electron populations 1.21360 0.91327 0.99999 1.04297 1.21422 0.95546 0.90505 1.03523 1.21316 0.98965 0.94684 1.01839 1.23283 1.01944 1.02308 0.94194 1.22607 1.00264 1.00371 0.92290 0.88538 1.22141 0.90133 0.90543 0.92110 0.93283 1.23246 0.98563 0.98818 0.98221 1.23209 0.97079 1.00861 0.97229 1.20266 0.94042 0.84843 0.85877 0.94671 1.21393 0.92997 0.93188 1.50539 0.92505 1.25027 0.98533 0.94976 0.94003 1.70045 1.33856 0.99412 1.46481 0.86728 0.85503 0.78164 0.78296 1.20664 1.21151 1.19922 1.88773 1.68700 1.42393 1.26717 0.89010 0.93889 0.93339 0.93292 0.92626 0.92088 0.89578 0.89290 0.91746 0.92078 0.92470 0.91785 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 8.73 37.16 0.32 -1.81 16 2 C -0.11 -1.88 2.69 -154.47 -0.42 -2.29 16 3 C -0.11 -1.63 9.85 37.16 0.37 -1.27 16 4 C -0.18 -2.72 9.48 -26.70 -0.25 -2.97 16 5 C -0.14 -2.44 5.19 -90.62 -0.47 -2.91 16 6 H 0.10 1.65 7.97 -51.93 -0.41 1.24 16 7 C 0.11 2.26 2.90 -25.71 -0.07 2.18 16 8 H 0.05 1.04 7.89 -51.93 -0.41 0.63 16 9 C -0.15 -2.79 6.57 -24.49 -0.16 -2.95 16 10 C -0.15 -3.09 6.53 -24.79 -0.16 -3.25 16 11 C 0.21 5.36 3.36 -27.16 -0.09 5.27 16 12 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 13 C -0.54 -15.40 8.75 -34.44 -0.30 -15.71 16 14 H 0.06 1.58 7.52 -52.48 -0.39 1.18 16 15 C 0.08 2.29 5.41 -17.82 -0.10 2.19 16 16 N -0.86 -25.65 12.91 55.43 0.72 -24.93 16 17 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 O -0.35 -8.91 8.53 -35.23 -0.30 -9.21 16 22 H 0.09 2.13 6.84 -51.93 -0.36 1.77 16 23 H 0.04 0.71 7.92 -51.93 -0.41 0.30 16 24 H 0.05 0.90 7.85 -51.93 -0.41 0.49 16 25 H 0.05 0.62 7.90 -51.93 -0.41 0.21 16 26 H 0.05 0.75 7.92 -51.93 -0.41 0.34 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 29 H 0.09 1.32 7.98 -51.93 -0.41 0.91 16 30 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.35 7.66 -51.93 -0.40 0.95 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 276.08 15.07 4.16 4.16 Total: -1.00 -29.75 276.08 -7.46 -37.21 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.68 Total: -0.31 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -1.33 Total: -23.51 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.72 Total: -24.93 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.30 Total: -9.21 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.75 -7.46 -37.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700687934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.109 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds