Wall clock time and date at job start Mon Mar 30 2020 03:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 N 1.46904 * 109.46891 * 180.02562 * 9 7 2 11 11 C 1.48649 * 110.99814 * 285.62533 * 10 9 7 12 12 C 1.54627 * 104.64075 * 201.41703 * 11 10 9 13 13 H 1.08998 * 110.40304 * 142.50973 * 12 11 10 14 14 N 1.46900 * 110.49635 * 264.86974 * 12 11 10 15 15 C 1.53356 * 104.67066 * 23.71557 * 12 11 10 16 16 C 1.52788 * 115.66035 * 129.28570 * 15 12 11 17 17 C 1.53968 * 86.78324 * 92.78429 * 16 15 12 18 18 C 1.52809 * 115.62673 * 230.22546 * 15 12 11 19 19 C 1.48789 * 111.00172 * 170.00218 * 10 9 7 20 20 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 22 22 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 23 23 H 1.08996 * 110.40071 * 320.20544 * 11 10 9 24 24 H 1.08997 * 110.40170 * 82.62712 * 11 10 9 25 25 H 1.00896 * 110.99892 * 295.30348 * 14 12 11 26 26 H 1.00902 * 110.99972 * 59.25602 * 14 12 11 27 27 H 1.09002 * 113.66528 * 207.25401 * 16 15 12 28 28 H 1.09000 * 113.66040 * 338.31473 * 16 15 12 29 29 H 1.08997 * 113.58220 * 270.09662 * 17 16 15 30 30 H 1.08997 * 113.58446 * 139.28595 * 17 16 15 31 31 H 1.08995 * 113.66365 * 21.65746 * 18 15 12 32 32 H 1.09003 * 113.66040 * 152.71746 * 18 15 12 33 33 H 1.08997 * 110.45778 * 276.97424 * 19 10 9 34 34 H 1.08998 * 110.45926 * 39.54105 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 7 2.2056 -3.6158 0.0041 11 6 2.8307 -3.7807 -1.3345 12 6 3.3392 -5.2409 -1.3511 13 1 3.2012 -5.6801 -2.3391 14 7 4.7541 -5.2973 -0.9600 15 6 2.4696 -5.9668 -0.3174 16 6 1.8133 -7.2607 -0.7965 17 6 3.0441 -7.9925 -0.2307 18 6 3.2276 -6.7948 0.7193 19 6 1.5133 -4.9095 0.2507 20 1 -0.4850 0.8401 0.0004 21 1 0.6281 -2.5552 0.8979 22 1 0.6206 -2.5586 -0.8820 23 1 2.0916 -3.6268 -2.1206 24 1 3.6631 -3.0871 -1.4532 25 1 5.3349 -4.8221 -1.6344 26 1 4.8890 -4.9173 -0.0350 27 1 0.8853 -7.4991 -0.2767 28 1 1.7232 -7.3301 -1.8806 29 1 3.8538 -8.1054 -0.9515 30 1 2.8006 -8.9228 0.2825 31 1 4.2670 -6.4921 0.8459 32 1 2.6978 -6.9021 1.6659 33 1 1.3651 -5.0646 1.3194 34 1 0.5589 -4.9372 -0.2751 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885371962.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:14 Heat of formation + Delta-G solvation = 24.843056 kcal Electronic energy + Delta-G solvation = -14402.467641 eV Core-core repulsion = 12142.543469 eV Total energy + Delta-G solvation = -2259.924171 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.07193 -35.96621 -33.39109 -32.30317 -28.58911 -26.97981 -25.74730 -25.14452 -22.37927 -21.34370 -20.22324 -17.87906 -16.31601 -15.95724 -15.18658 -14.93032 -14.47290 -13.94244 -13.69640 -13.25072 -12.67038 -12.34067 -12.08397 -11.63182 -11.37554 -11.33382 -11.07562 -10.85019 -10.67191 -10.55620 -10.15294 -10.13327 -9.83254 -9.64278 -9.16543 -8.48240 -8.29576 -7.41120 -6.04123 -4.05783 3.31689 3.35704 3.38623 4.40825 4.63806 4.82719 4.86960 5.01932 5.14404 5.29383 5.37848 5.45369 5.69129 5.77231 5.88798 5.99355 6.00030 6.08998 6.26044 6.32966 6.36528 6.49149 6.52400 6.69117 6.76051 7.10749 7.27440 7.46179 7.71299 7.78209 7.98552 8.15236 8.49450 9.01387 9.58428 11.06854 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.056998 B = 0.007601 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.123159 B = 3682.879250 C = 3940.487874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.182 3.818 10 N -0.505 5.505 11 C 0.013 3.987 12 C 0.107 3.893 13 H 0.077 0.923 14 N -0.835 5.835 15 C -0.079 4.079 16 C -0.130 4.130 17 C -0.133 4.133 18 C -0.116 4.116 19 C 0.041 3.959 20 H 0.262 0.738 21 H 0.029 0.971 22 H -0.007 1.007 23 H 0.037 0.963 24 H 0.073 0.927 25 H 0.334 0.666 26 H 0.347 0.653 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -12.202 -1.751 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.057 3.943 10 N -0.229 5.229 11 C -0.117 4.117 12 C -0.005 4.005 13 H 0.095 0.905 14 N -0.364 5.364 15 C -0.080 4.080 16 C -0.168 4.168 17 C -0.170 4.170 18 C -0.154 4.154 19 C -0.088 4.088 20 H 0.071 0.929 21 H 0.047 0.953 22 H 0.011 0.989 23 H 0.055 0.945 24 H 0.092 0.908 25 H 0.147 0.853 26 H 0.161 0.839 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.566 -12.724 -1.396 13.958 hybrid contribution -0.513 2.023 -0.624 2.178 sum 5.053 -10.702 -2.020 12.006 Atomic orbital electron populations 1.69951 1.06072 1.26893 1.50988 1.25004 0.94882 0.99340 0.95451 0.86548 0.79432 0.82724 0.78616 1.20335 1.21299 1.20151 1.21075 0.93363 0.89941 1.50089 0.92161 1.19878 0.90288 0.88018 0.96163 1.65509 1.30076 1.02290 1.25018 1.23825 0.99756 0.95821 0.92335 1.21855 0.87937 0.93899 0.96844 0.90475 1.59103 1.05892 1.63599 1.07787 1.21904 0.96138 0.93346 0.96605 1.22858 0.97627 0.95998 1.00299 1.22787 0.98087 0.96758 0.99383 1.22649 1.01448 0.95224 0.96073 1.22981 0.95156 0.90467 1.00160 0.92854 0.95333 0.98905 0.94504 0.90827 0.85349 0.83893 0.90382 0.91955 0.90027 0.92557 0.90069 0.91052 0.90998 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.49 8.97 -34.44 -0.31 -14.80 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.18 4.86 4.59 -4.98 -0.02 4.84 16 10 N -0.50 -11.03 5.33 -231.56 -1.23 -12.27 16 11 C 0.01 0.25 5.84 -2.00 -0.01 0.24 16 12 C 0.11 1.64 3.77 -66.67 -0.25 1.39 16 13 H 0.08 1.13 7.77 -51.93 -0.40 0.73 16 14 N -0.83 -11.31 8.05 -3.78 -0.03 -11.34 16 15 C -0.08 -1.20 1.14 -154.30 -0.18 -1.37 16 16 C -0.13 -1.69 7.34 -26.34 -0.19 -1.88 16 17 C -0.13 -1.60 7.94 -25.73 -0.20 -1.81 16 18 C -0.12 -1.58 6.97 -26.33 -0.18 -1.76 16 19 C 0.04 0.76 5.87 -2.53 -0.01 0.75 16 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 22 H -0.01 -0.20 7.77 -51.93 -0.40 -0.60 16 23 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 24 H 0.07 1.46 8.06 -51.93 -0.42 1.04 16 25 H 0.33 4.07 9.08 -39.29 -0.36 3.71 16 26 H 0.35 4.99 7.87 -39.29 -0.31 4.68 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.78 7.88 -51.93 -0.41 0.37 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.12 6.10 -51.93 -0.32 0.80 16 32 H 0.07 0.95 7.97 -51.93 -0.41 0.53 16 33 H 0.07 1.31 7.84 -51.93 -0.41 0.90 16 34 H 0.04 0.67 7.96 -51.93 -0.41 0.26 16 LS Contribution 270.10 15.07 4.07 4.07 Total: -1.00 -29.58 270.10 -8.43 -38.01 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.49 Total: 3.97 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.46 Total: -12.93 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.53 Total: -49.98 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.58 -8.43 -38.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885371962.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.857 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds