Wall clock time and date at job start Mon Mar 30 2020 03:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 N 1.46904 * 109.46891 * 180.02562 * 9 7 2 11 11 C 1.48649 * 110.99814 * 285.62533 * 10 9 7 12 12 C 1.54627 * 104.64075 * 201.41703 * 11 10 9 13 13 H 1.08998 * 110.40304 * 142.50973 * 12 11 10 14 14 N 1.46900 * 110.49635 * 264.86974 * 12 11 10 15 15 C 1.53356 * 104.67066 * 23.71557 * 12 11 10 16 16 C 1.52788 * 115.66035 * 129.28570 * 15 12 11 17 17 C 1.53968 * 86.78324 * 92.78429 * 16 15 12 18 18 C 1.52809 * 115.62673 * 230.22546 * 15 12 11 19 19 C 1.48789 * 111.00172 * 170.00218 * 10 9 7 20 20 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 22 22 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 23 23 H 1.08996 * 110.40071 * 320.20544 * 11 10 9 24 24 H 1.08997 * 110.40170 * 82.62712 * 11 10 9 25 25 H 1.00896 * 110.99892 * 295.30348 * 14 12 11 26 26 H 1.00902 * 110.99972 * 59.25602 * 14 12 11 27 27 H 1.09002 * 113.66528 * 207.25401 * 16 15 12 28 28 H 1.09000 * 113.66040 * 338.31473 * 16 15 12 29 29 H 1.08997 * 113.58220 * 270.09662 * 17 16 15 30 30 H 1.08997 * 113.58446 * 139.28595 * 17 16 15 31 31 H 1.08995 * 113.66365 * 21.65746 * 18 15 12 32 32 H 1.09003 * 113.66040 * 152.71746 * 18 15 12 33 33 H 1.08997 * 110.45778 * 276.97424 * 19 10 9 34 34 H 1.08998 * 110.45926 * 39.54105 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 7 2.2056 -3.6158 0.0041 11 6 2.8307 -3.7807 -1.3345 12 6 3.3392 -5.2409 -1.3511 13 1 3.2012 -5.6801 -2.3391 14 7 4.7541 -5.2973 -0.9600 15 6 2.4696 -5.9668 -0.3174 16 6 1.8133 -7.2607 -0.7965 17 6 3.0441 -7.9925 -0.2307 18 6 3.2276 -6.7948 0.7193 19 6 1.5133 -4.9095 0.2507 20 1 -0.4850 0.8401 0.0004 21 1 0.6281 -2.5552 0.8979 22 1 0.6206 -2.5586 -0.8820 23 1 2.0916 -3.6268 -2.1206 24 1 3.6631 -3.0871 -1.4532 25 1 5.3349 -4.8221 -1.6344 26 1 4.8890 -4.9173 -0.0350 27 1 0.8853 -7.4991 -0.2767 28 1 1.7232 -7.3301 -1.8806 29 1 3.8538 -8.1054 -0.9515 30 1 2.8006 -8.9228 0.2825 31 1 4.2670 -6.4921 0.8459 32 1 2.6978 -6.9021 1.6659 33 1 1.3651 -5.0646 1.3194 34 1 0.5589 -4.9372 -0.2751 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885371962.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:14 Heat of formation + Delta-G solvation = 3.230962 kcal Electronic energy + Delta-G solvation = -14403.404811 eV Core-core repulsion = 12142.543469 eV Total energy + Delta-G solvation = -2260.861342 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.35947 -37.49874 -35.08633 -34.08065 -30.35674 -28.41883 -27.41950 -26.35106 -24.21469 -22.52195 -21.92881 -19.17530 -18.43230 -17.22329 -16.72103 -16.40614 -16.07136 -15.51791 -15.08256 -14.82932 -14.24829 -14.10618 -13.48216 -13.08819 -12.95672 -12.93493 -12.62218 -12.51519 -12.43238 -12.06156 -11.94634 -11.52995 -11.19201 -10.95424 -10.85586 -10.66497 -9.55932 -9.24282 -8.26022 -6.37507 1.36888 1.40684 1.48844 2.35940 3.05856 3.27247 3.56732 3.60966 3.81135 3.93412 4.12335 4.14486 4.40345 4.48826 4.62448 4.70000 4.82272 4.90736 4.96603 5.00227 5.00814 5.06985 5.15236 5.19037 5.41386 5.55622 5.57515 5.68927 5.94664 6.16831 6.26000 6.43960 6.66137 6.77559 7.32684 8.85240 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.056998 B = 0.007601 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.123159 B = 3682.879250 C = 3940.487874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.198 3.802 10 N -0.512 5.512 11 C 0.012 3.988 12 C 0.121 3.879 13 H 0.093 0.907 14 N -0.822 5.822 15 C -0.083 4.083 16 C -0.126 4.126 17 C -0.117 4.117 18 C -0.116 4.116 19 C 0.039 3.961 20 H 0.266 0.734 21 H -0.001 1.001 22 H -0.038 1.038 23 H 0.017 0.983 24 H 0.066 0.934 25 H 0.345 0.655 26 H 0.344 0.656 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.036 -13.076 -1.966 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.078 0.922 9 C 0.071 3.929 10 N -0.236 5.236 11 C -0.118 4.118 12 C 0.008 3.992 13 H 0.111 0.889 14 N -0.351 5.351 15 C -0.084 4.084 16 C -0.164 4.164 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.090 4.090 20 H 0.074 0.926 21 H 0.017 0.983 22 H -0.021 1.021 23 H 0.036 0.964 24 H 0.084 0.916 25 H 0.158 0.842 26 H 0.158 0.842 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 7.212 -13.624 -1.617 15.500 hybrid contribution -1.053 2.275 -0.546 2.565 sum 6.159 -11.349 -2.163 13.092 Atomic orbital electron populations 1.70086 1.07842 1.28120 1.51534 1.25984 0.95804 1.03423 0.94597 0.85380 0.78138 0.77593 0.79166 1.19181 1.20598 1.19199 1.21380 0.93486 0.91079 1.50462 0.92160 1.19518 0.90315 0.89836 0.93193 1.65396 1.29008 1.02458 1.26746 1.23915 0.98746 0.98886 0.90288 1.21746 0.88795 0.90801 0.97814 0.88914 1.59107 1.04696 1.63378 1.07906 1.21992 0.95898 0.93121 0.97403 1.22884 0.98364 0.94249 1.00931 1.22697 0.97314 0.96765 0.98694 1.22677 1.01052 0.95513 0.96090 1.23076 0.95507 0.90082 1.00310 0.92556 0.98321 1.02073 0.96430 0.91590 0.84194 0.84217 0.89832 0.91231 0.89691 0.90691 0.90132 0.90790 0.91054 0.95905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.66 13.29 21.45 0.28 -57.38 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.53 -30.82 8.97 25.60 0.23 -30.59 16 8 H 0.06 3.45 7.81 -2.92 -0.02 3.43 16 9 C 0.20 11.08 4.59 85.56 0.39 11.47 16 10 N -0.51 -22.97 5.33 -886.53 -4.72 -27.70 16 11 C 0.01 0.48 5.84 86.52 0.51 0.98 16 12 C 0.12 3.54 3.77 45.59 0.17 3.71 16 13 H 0.09 2.49 7.77 -2.39 -0.02 2.47 16 14 N -0.82 -20.45 8.05 -165.89 -1.34 -21.79 16 15 C -0.08 -2.40 1.14 -52.05 -0.06 -2.45 16 16 C -0.13 -2.97 7.34 30.85 0.23 -2.74 16 17 C -0.12 -2.43 7.94 31.24 0.25 -2.18 16 18 C -0.12 -2.86 6.97 30.86 0.22 -2.65 16 19 C 0.04 1.45 5.87 86.09 0.51 1.96 16 20 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 21 H 0.00 -0.08 8.08 -2.39 -0.02 -0.10 16 22 H -0.04 -2.33 7.77 -2.39 -0.02 -2.35 16 23 H 0.02 0.74 7.75 -2.39 -0.02 0.72 16 24 H 0.07 2.63 8.06 -2.39 -0.02 2.61 16 25 H 0.34 7.59 9.08 -89.70 -0.81 6.77 16 26 H 0.34 9.25 7.87 -89.69 -0.71 8.54 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 1.55 7.88 -2.39 -0.02 1.53 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 2.02 6.10 -2.39 -0.01 2.00 16 32 H 0.07 1.80 7.97 -2.39 -0.02 1.78 16 33 H 0.07 2.64 7.84 -2.39 -0.02 2.62 16 34 H 0.02 0.90 7.96 -2.39 -0.02 0.88 16 Total: -1.00 -64.41 270.10 -1.29 -65.70 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -0.43 Total: 16.22 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 2.90 Total: -22.03 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -5.77 Total: -106.86 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.41 -1.29 -65.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885371962.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.927 kcal (2) G-P(sol) polarization free energy of solvation -64.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds