Wall clock time and date at job start Mon Mar 30 2020 02:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99849 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.58065 * 34.73352 * 11 10 9 13 13 C 1.53142 * 109.57821 * 274.34184 * 11 10 9 14 14 N 1.46917 * 109.37072 * 240.21216 * 13 11 10 15 15 C 1.46943 * 111.05621 * 61.98595 * 14 13 11 16 16 C 1.53129 * 109.35587 * 298.04220 * 15 14 13 17 17 C 1.53378 * 109.57757 * 155.00329 * 11 10 9 18 18 C 1.53400 * 108.60251 * 178.75502 * 17 11 10 19 19 C 1.46946 * 111.05369 * 297.99460 * 14 13 11 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 22 22 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 23 23 H 1.00899 * 111.00084 * 303.95478 * 10 9 7 24 24 H 1.09002 * 109.49096 * 0.17783 * 13 11 10 25 25 H 1.08993 * 109.49106 * 120.24638 * 13 11 10 26 26 H 1.08994 * 109.48965 * 178.06955 * 15 14 13 27 27 H 1.09006 * 109.50684 * 58.01470 * 15 14 13 28 28 H 1.09001 * 109.56934 * 240.13596 * 16 15 14 29 29 H 1.08999 * 109.68016 * 119.81605 * 16 15 14 30 30 H 1.09007 * 110.11262 * 300.18699 * 17 11 10 31 31 H 1.09002 * 109.57088 * 60.79748 * 18 17 11 32 32 H 1.08994 * 109.57331 * 181.18168 * 18 17 11 33 33 H 1.08997 * 109.48941 * 181.91975 * 19 14 13 34 34 H 1.09003 * 109.48549 * 301.96499 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 1 0.5895 -4.8256 -0.5865 13 6 1.1641 -5.3065 1.4374 14 7 1.8160 -6.5840 1.7560 15 6 3.2784 -6.4650 1.6754 16 6 3.6796 -6.0981 0.2439 17 6 2.4118 -5.9831 -0.6118 18 6 1.6717 -7.3262 -0.5728 19 6 1.3269 -7.6588 0.8815 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 0.8897 22 1 0.6240 -2.5568 -0.8903 23 1 2.8405 -3.5487 -0.7819 24 1 1.5189 -4.5365 2.1225 25 1 0.0843 -5.4142 1.5385 26 1 3.7362 -7.4155 1.9492 27 1 3.6185 -5.6871 2.3591 28 1 4.3267 -6.8745 -0.1643 29 1 4.2081 -5.1448 0.2437 30 1 2.6736 -5.7158 -1.6357 31 1 0.7551 -7.2551 -1.1584 32 1 2.3108 -8.1073 -0.9845 33 1 1.8007 -8.5995 1.1616 34 1 0.2459 -7.7503 0.9876 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020361587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:41 Heat of formation + Delta-G solvation = 0.029911 kcal Electronic energy + Delta-G solvation = -14464.862888 eV Core-core repulsion = 12203.862738 eV Total energy + Delta-G solvation = -2261.000150 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.38389 -34.92067 -32.50497 -31.65852 -30.73084 -29.00936 -25.85679 -22.92509 -22.68426 -22.18037 -20.88354 -17.26177 -16.52972 -16.08058 -15.83517 -15.42006 -14.55980 -13.84270 -13.04944 -12.86891 -12.74305 -12.39946 -11.98185 -11.84817 -11.77671 -11.57377 -11.30539 -11.15944 -10.81388 -10.75702 -10.44175 -10.09122 -9.90665 -9.66911 -9.15556 -8.49349 -8.01742 -7.24869 -6.03228 -4.05205 3.32077 3.37765 3.41348 4.30666 4.42515 4.78180 4.87072 5.06564 5.32711 5.35905 5.38217 5.44499 5.49872 5.64090 5.69570 5.79487 5.88695 6.03024 6.10401 6.17089 6.22655 6.42501 6.50989 6.53799 6.64015 7.22041 7.36244 7.40766 7.45780 7.79495 8.13904 8.39638 8.61652 9.04270 9.59783 11.07864 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.058792 B = 0.007173 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.143181 B = 3902.566396 C = 4005.704190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.679 5.679 11 C 0.059 3.941 12 H 0.036 0.964 13 C 0.064 3.936 14 N -0.532 5.532 15 C 0.060 3.940 16 C -0.141 4.141 17 C -0.091 4.091 18 C -0.147 4.147 19 C 0.052 3.948 20 H 0.261 0.739 21 H 0.028 0.972 22 H -0.016 1.016 23 H 0.326 0.674 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 -13.623 0.035 14.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.310 5.310 11 C -0.053 4.053 12 H 0.054 0.946 13 C -0.065 4.065 14 N -0.252 5.252 15 C -0.069 4.069 16 C -0.180 4.180 17 C -0.111 4.111 18 C -0.187 4.187 19 C -0.076 4.076 20 H 0.071 0.929 21 H 0.046 0.954 22 H 0.002 0.998 23 H 0.143 0.857 24 H 0.109 0.891 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.807 -13.607 1.247 14.185 hybrid contribution 0.185 1.181 -1.922 2.263 sum 3.992 -12.427 -0.674 13.069 Atomic orbital electron populations 1.69966 1.06079 1.26762 1.50907 1.24994 0.94870 0.99359 0.95356 0.86488 0.79654 0.83041 0.78140 1.20588 1.19904 1.21319 1.21186 0.93470 0.90289 1.50326 0.92036 1.19587 0.90583 0.87377 0.95659 1.60861 1.20823 1.00769 1.48556 1.22165 0.95456 0.90826 0.96885 0.94646 1.22318 0.98074 0.90395 0.95674 1.62568 1.05658 1.05855 1.51151 1.22082 0.87805 1.01090 0.95882 1.22108 0.96992 1.02209 0.96653 1.21321 0.95886 0.94808 0.99088 1.22251 1.00447 0.97210 0.98751 1.22173 1.00440 0.94850 0.90167 0.92925 0.95360 0.99814 0.85705 0.89050 0.91602 0.91722 0.90422 0.92881 0.90341 0.91090 0.91975 0.92028 0.91211 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.64 9.32 -34.44 -0.32 -14.96 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 5.12 5.24 -4.98 -0.03 5.09 16 10 N -0.68 -14.48 5.41 -107.71 -0.58 -15.06 16 11 C 0.06 1.06 2.47 -67.44 -0.17 0.90 16 12 H 0.04 0.70 7.80 -51.93 -0.41 0.29 16 13 C 0.06 1.11 5.72 -3.74 -0.02 1.09 16 14 N -0.53 -7.97 5.22 -234.29 -1.22 -9.20 16 15 C 0.06 0.84 6.09 -3.73 -0.02 0.81 16 16 C -0.14 -1.96 5.59 -26.46 -0.15 -2.11 16 17 C -0.09 -1.36 2.82 -90.01 -0.25 -1.61 16 18 C -0.15 -1.86 5.75 -26.46 -0.15 -2.01 16 19 C 0.05 0.67 6.09 -3.74 -0.02 0.64 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.03 0.80 8.04 -51.92 -0.42 0.38 16 22 H -0.02 -0.45 8.06 -51.93 -0.42 -0.87 16 23 H 0.33 6.76 8.23 -39.29 -0.32 6.43 16 24 H 0.09 1.80 7.86 -51.93 -0.41 1.39 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.21 7.52 -51.93 -0.39 0.81 16 30 H 0.07 1.05 8.13 -51.92 -0.42 0.63 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 266.25 15.07 4.01 4.01 Total: -1.00 -29.38 266.25 -9.02 -38.40 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.71 Total: 1.97 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.23 Total: -10.65 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -1.07 Total: -50.54 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.38 -9.02 -38.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020361587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.428 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds