Wall clock time and date at job start Mon Mar 30 2020 02:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99849 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.58065 * 34.73352 * 11 10 9 13 13 C 1.53142 * 109.57821 * 274.34184 * 11 10 9 14 14 N 1.46917 * 109.37072 * 240.21216 * 13 11 10 15 15 C 1.46943 * 111.05621 * 61.98595 * 14 13 11 16 16 C 1.53129 * 109.35587 * 298.04220 * 15 14 13 17 17 C 1.53378 * 109.57757 * 155.00329 * 11 10 9 18 18 C 1.53400 * 108.60251 * 178.75502 * 17 11 10 19 19 C 1.46946 * 111.05369 * 297.99460 * 14 13 11 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 22 22 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 23 23 H 1.00899 * 111.00084 * 303.95478 * 10 9 7 24 24 H 1.09002 * 109.49096 * 0.17783 * 13 11 10 25 25 H 1.08993 * 109.49106 * 120.24638 * 13 11 10 26 26 H 1.08994 * 109.48965 * 178.06955 * 15 14 13 27 27 H 1.09006 * 109.50684 * 58.01470 * 15 14 13 28 28 H 1.09001 * 109.56934 * 240.13596 * 16 15 14 29 29 H 1.08999 * 109.68016 * 119.81605 * 16 15 14 30 30 H 1.09007 * 110.11262 * 300.18699 * 17 11 10 31 31 H 1.09002 * 109.57088 * 60.79748 * 18 17 11 32 32 H 1.08994 * 109.57331 * 181.18168 * 18 17 11 33 33 H 1.08997 * 109.48941 * 181.91975 * 19 14 13 34 34 H 1.09003 * 109.48549 * 301.96499 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 1 0.5895 -4.8256 -0.5865 13 6 1.1641 -5.3065 1.4374 14 7 1.8160 -6.5840 1.7560 15 6 3.2784 -6.4650 1.6754 16 6 3.6796 -6.0981 0.2439 17 6 2.4118 -5.9831 -0.6118 18 6 1.6717 -7.3262 -0.5728 19 6 1.3269 -7.6588 0.8815 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 0.8897 22 1 0.6240 -2.5568 -0.8903 23 1 2.8405 -3.5487 -0.7819 24 1 1.5189 -4.5365 2.1225 25 1 0.0843 -5.4142 1.5385 26 1 3.7362 -7.4155 1.9492 27 1 3.6185 -5.6871 2.3591 28 1 4.3267 -6.8745 -0.1643 29 1 4.2081 -5.1448 0.2437 30 1 2.6736 -5.7158 -1.6357 31 1 0.7551 -7.2551 -1.1584 32 1 2.3108 -8.1073 -0.9845 33 1 1.8007 -8.5995 1.1616 34 1 0.2459 -7.7503 0.9876 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020361587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:40 Heat of formation + Delta-G solvation = -21.105519 kcal Electronic energy + Delta-G solvation = -14465.779389 eV Core-core repulsion = 12203.862738 eV Total energy + Delta-G solvation = -2261.916651 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.62622 -36.71761 -34.53361 -32.93150 -31.80206 -30.68690 -27.81317 -24.44542 -23.78770 -23.73082 -22.51826 -18.85901 -18.18983 -17.39792 -17.23215 -16.79292 -16.52014 -15.44961 -14.72619 -14.54038 -13.92090 -13.83945 -13.48560 -13.33807 -13.04061 -13.00039 -12.84551 -12.68765 -12.55107 -12.41777 -12.08547 -11.66088 -11.39196 -11.14208 -10.89419 -10.68552 -9.41002 -8.92873 -8.24667 -6.36260 1.39474 1.41658 1.52663 2.38154 3.08516 3.12500 3.40572 3.66153 3.88070 4.01123 4.28388 4.30695 4.32972 4.40282 4.44052 4.54251 4.68536 4.93143 4.99127 5.02190 5.02777 5.13403 5.16559 5.20835 5.26156 5.32046 5.41571 5.59747 5.99776 6.13414 6.25508 6.43828 6.70272 6.86640 7.34952 8.87039 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.058792 B = 0.007173 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.143181 B = 3902.566396 C = 4005.704190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.273 1.273 5 H -0.263 1.263 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.213 3.787 10 N -0.673 5.673 11 C 0.056 3.944 12 H 0.015 0.985 13 C 0.071 3.929 14 N -0.536 5.536 15 C 0.058 3.942 16 C -0.136 4.136 17 C -0.089 4.089 18 C -0.140 4.140 19 C 0.050 3.950 20 H 0.265 0.735 21 H -0.001 1.001 22 H -0.046 1.046 23 H 0.330 0.670 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.522 -14.793 -0.210 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.187 1.187 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.085 3.915 10 N -0.303 5.303 11 C -0.056 4.056 12 H 0.033 0.967 13 C -0.058 4.058 14 N -0.256 5.256 15 C -0.070 4.070 16 C -0.175 4.175 17 C -0.109 4.109 18 C -0.180 4.180 19 C -0.078 4.078 20 H 0.074 0.926 21 H 0.017 0.983 22 H -0.028 1.028 23 H 0.148 0.852 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.321 -14.808 1.002 15.767 hybrid contribution -0.313 1.483 -1.832 2.378 sum 5.008 -13.325 -0.830 14.259 Atomic orbital electron populations 1.70099 1.07859 1.28021 1.51464 1.25980 0.95795 1.03465 0.94521 0.85311 0.78492 0.77861 0.78491 1.19814 1.18703 1.20632 1.21543 0.93774 0.91434 1.50684 0.91765 1.19193 0.90546 0.88971 0.92810 1.60746 1.19920 1.00975 1.48680 1.22278 0.95312 0.90372 0.97615 0.96654 1.22093 0.98102 0.91305 0.94300 1.62561 1.06273 1.04829 1.51968 1.22152 0.87140 1.02113 0.95581 1.22073 0.96581 1.02239 0.96569 1.21326 0.95871 0.94786 0.98910 1.22223 1.00638 0.96216 0.98893 1.22316 1.00958 0.94810 0.89718 0.92602 0.98269 1.02802 0.85224 0.91997 0.91870 0.88796 0.92099 0.89999 0.92268 0.91010 0.92068 0.89311 0.88524 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 2 C 0.00 0.03 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.20 9.32 25.60 0.24 -30.96 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.21 11.72 5.24 85.55 0.45 12.17 16 10 N -0.67 -29.61 5.41 -494.67 -2.68 -32.28 16 11 C 0.06 2.07 2.47 45.09 0.11 2.18 16 12 H 0.02 0.63 7.80 -2.39 -0.02 0.61 16 13 C 0.07 2.54 5.72 86.35 0.49 3.03 16 14 N -0.54 -15.28 5.22 -895.15 -4.67 -19.96 16 15 C 0.06 1.51 6.09 86.34 0.53 2.03 16 16 C -0.14 -3.48 5.59 30.77 0.17 -3.31 16 17 C -0.09 -2.52 2.82 -10.40 -0.03 -2.55 16 18 C -0.14 -3.13 5.75 30.77 0.18 -2.95 16 19 C 0.05 1.13 6.09 86.33 0.53 1.65 16 20 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 21 H 0.00 -0.05 8.04 -2.38 -0.02 -0.07 16 22 H -0.05 -2.73 8.06 -2.39 -0.02 -2.75 16 23 H 0.33 13.96 8.23 -89.69 -0.74 13.22 16 24 H 0.06 2.55 7.86 -2.39 -0.02 2.53 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.75 7.52 -2.39 -0.02 1.73 16 30 H 0.07 2.02 8.13 -2.38 -0.02 2.00 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -64.21 266.25 -1.59 -65.81 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.32 Total: 14.91 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 3.13 Total: -18.21 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -7.07 Total: -109.40 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -64.21 -1.59 -65.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020361587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.700 kcal (2) G-P(sol) polarization free energy of solvation -64.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds