Wall clock time and date at job start Mon Mar 30 2020 02:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.29138 * 304.33574 * 11 10 9 13 13 C 1.54270 * 110.31973 * 66.45350 * 11 10 9 14 14 C 1.54385 * 105.05622 * 118.89942 * 13 11 10 15 15 N 1.48561 * 104.59461 * 23.85148 * 14 13 11 16 16 C 1.46904 * 110.99665 * 200.95610 * 15 14 13 17 17 C 1.53006 * 117.49367 * 128.62395 * 16 15 14 18 18 C 1.53000 * 117.49308 * 59.96888 * 16 15 14 19 19 C 1.48560 * 104.22460 * 320.51629 * 15 14 13 20 20 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 21 21 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 22 22 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 23 23 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 24 24 H 1.08995 * 110.32101 * 237.79261 * 13 11 10 25 25 H 1.08991 * 110.32172 * 359.90428 * 13 11 10 26 26 H 1.09001 * 110.40966 * 142.63547 * 14 13 11 27 27 H 1.08998 * 110.40843 * 265.07494 * 14 13 11 28 28 H 1.08993 * 115.55094 * 274.29365 * 16 15 14 29 29 H 1.08999 * 117.49581 * 0.02562 * 17 16 15 30 30 H 1.08999 * 117.49045 * 145.02213 * 17 16 15 31 31 H 1.09008 * 117.49019 * 214.97715 * 18 16 15 32 32 H 1.08994 * 117.50829 * 359.96852 * 18 16 15 33 33 H 1.08995 * 110.41048 * 280.70433 * 19 15 14 34 34 H 1.08998 * 110.41153 * 158.25773 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3804 -4.7322 0.8456 13 6 0.2761 -4.8517 -1.3247 14 6 0.6177 -6.2161 -1.9614 15 7 1.0221 -7.0725 -0.8168 16 6 1.8330 -8.2100 -1.2713 17 6 3.1705 -8.4497 -0.5680 18 6 3.1440 -7.8982 -1.9957 19 6 1.8153 -6.1673 0.0540 20 1 -0.4850 0.8401 0.0004 21 1 0.3557 -2.3880 0.0005 22 1 2.6849 -3.7145 -0.8894 23 1 2.6848 -3.7144 0.8905 24 1 -0.7941 -4.7817 -1.1308 25 1 0.5965 -4.0379 -1.9751 26 1 -0.2582 -6.6337 -2.4580 27 1 1.4417 -6.1106 -2.6670 28 1 1.2727 -9.0856 -1.5991 29 1 3.4485 -7.7636 0.2320 30 1 3.4903 -9.4830 -0.4336 31 1 3.4464 -8.5690 -2.8000 32 1 3.4046 -6.8491 -2.1356 33 1 2.8267 -6.0543 -0.3362 34 1 1.8411 -6.5483 1.0750 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037904788.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:14 Heat of formation + Delta-G solvation = 42.701996 kcal Electronic energy + Delta-G solvation = -14009.536978 eV Core-core repulsion = 11750.387228 eV Total energy + Delta-G solvation = -2259.149750 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.71694 -36.26104 -34.07850 -31.53447 -29.26610 -28.77663 -25.08327 -22.79439 -22.69332 -21.96196 -19.68621 -19.47251 -17.22557 -16.30078 -15.81326 -15.05250 -14.48338 -13.95770 -13.34047 -13.13403 -12.88934 -12.66661 -12.09334 -11.83229 -11.71406 -11.39087 -10.98296 -10.83833 -10.68927 -10.59281 -10.38624 -10.19353 -10.10052 -9.88119 -9.64506 -8.84541 -8.33591 -6.89264 -5.73921 -3.02540 3.45566 3.49651 3.50947 3.63820 4.08177 4.60853 4.65406 4.79708 4.83787 5.01746 5.20076 5.35972 5.49031 5.52279 5.59088 5.65053 5.77800 5.88319 5.96566 5.99246 6.09404 6.10716 6.24346 6.34708 6.43226 6.54753 6.80334 6.91812 7.01325 7.12849 7.71326 8.45193 9.56168 10.14770 10.50025 11.48944 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.061830 B = 0.006203 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.743426 B = 4512.704022 C = 4705.209795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.098 4.098 12 H 0.079 0.921 13 C -0.117 4.117 14 C 0.034 3.966 15 N -0.481 5.481 16 C 0.013 3.987 17 C -0.184 4.184 18 C -0.217 4.217 19 C 0.035 3.965 20 H 0.255 0.745 21 H 0.385 0.615 22 H 0.016 0.984 23 H 0.017 0.983 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.598 -15.572 -2.917 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.118 4.118 12 H 0.097 0.903 13 C -0.155 4.155 14 C -0.093 4.093 15 N -0.204 5.204 16 C -0.097 4.097 17 C -0.222 4.222 18 C -0.256 4.256 19 C -0.093 4.093 20 H 0.065 0.935 21 H 0.218 0.782 22 H 0.034 0.966 23 H 0.035 0.965 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.140 0.860 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.243 -15.674 -2.635 16.222 hybrid contribution 0.959 1.207 -0.434 1.602 sum 4.201 -14.467 -3.069 15.374 Atomic orbital electron populations 1.69655 1.05096 1.25735 1.57744 1.24733 0.95515 0.97648 1.03054 0.86265 0.78515 0.83572 0.77822 1.21660 1.21285 1.21320 1.19192 0.90980 0.84251 1.42748 0.91340 1.42340 1.05908 0.99848 1.89407 1.20690 0.93007 0.85472 0.97486 1.22080 0.97719 0.93557 0.98430 0.90270 1.22352 1.00613 0.95856 0.96705 1.23155 1.00066 0.93314 0.92808 1.65430 1.34073 1.06601 1.14259 1.22992 0.86883 0.97300 1.02501 1.23300 1.00323 1.02478 0.96054 1.23415 1.04261 1.02339 0.95608 1.23221 0.95930 0.92358 0.97820 0.93470 0.78158 0.96642 0.96486 0.91339 0.90125 0.90495 0.93612 0.85999 0.88008 0.88559 0.88698 0.88606 0.93161 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.90 5.36 -59.91 -0.32 -19.22 16 10 C 0.16 3.35 5.34 -4.04 -0.02 3.33 16 11 C -0.10 -1.69 3.13 -89.23 -0.28 -1.97 16 12 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 13 C -0.12 -1.93 6.33 -25.34 -0.16 -2.09 16 14 C 0.03 0.47 6.43 -2.18 -0.01 0.46 16 15 N -0.48 -6.66 5.65 -222.02 -1.25 -7.92 16 16 C 0.01 0.15 6.37 -67.71 -0.43 -0.28 16 17 C -0.18 -1.91 9.59 -26.69 -0.26 -2.17 16 18 C -0.22 -2.34 9.00 -26.69 -0.24 -2.58 16 19 C 0.03 0.50 4.55 -2.18 -0.01 0.49 16 20 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 21 H 0.38 10.42 7.51 -40.82 -0.31 10.12 16 22 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.08 1.48 7.63 -51.93 -0.40 1.09 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.63 6.79 -51.93 -0.35 0.28 16 28 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.10 1.12 6.14 -51.93 -0.32 0.80 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.10 1.16 6.85 -51.93 -0.36 0.81 16 33 H 0.05 0.72 5.38 -51.93 -0.28 0.44 16 34 H 0.08 1.09 8.02 -51.93 -0.42 0.68 16 LS Contribution 270.78 15.07 4.08 4.08 Total: -1.00 -30.20 270.78 -8.81 -39.00 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.35 Total: 6.59 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.66 Total: -12.31 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.85 Total: -55.00 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.20 -8.81 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037904788.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.706 kcal (2) G-P(sol) polarization free energy of solvation -30.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds