Wall clock time and date at job start Mon Mar 30 2020 02:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99793 * 2 1 4 4 H 1.48495 * 109.47296 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46858 * 300.00121 * 3 2 1 6 6 H 1.48505 * 109.47162 * 59.99806 * 3 2 1 7 7 C 1.38805 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00053 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00313 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47224 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.78146 * 56.79572 * 11 10 9 13 13 C 1.54592 * 110.72305 * 293.54676 * 11 10 9 14 14 C 1.53993 * 105.13918 * 219.68616 * 13 11 10 15 15 N 1.47906 * 107.05680 * 358.77548 * 14 13 11 16 16 C 1.46900 * 110.99936 * 145.84861 * 15 14 13 17 17 C 1.53002 * 117.50082 * 136.83371 * 16 15 14 18 18 C 1.52998 * 117.49897 * 68.20975 * 16 15 14 19 19 C 1.48525 * 105.82089 * 25.33161 * 15 14 13 20 20 H 0.97003 * 120.00007 * 0.02562 * 1 2 3 21 21 H 0.97005 * 120.00281 * 359.97438 * 9 7 2 22 22 H 1.08997 * 109.47486 * 59.99792 * 10 9 7 23 23 H 1.09005 * 109.47002 * 300.00143 * 10 9 7 24 24 H 1.09006 * 110.31079 * 338.59628 * 13 11 10 25 25 H 1.08996 * 110.31180 * 100.76775 * 13 11 10 26 26 H 1.08994 * 109.91965 * 118.12754 * 14 13 11 27 27 H 1.08997 * 109.91566 * 239.42458 * 14 13 11 28 28 H 1.08999 * 115.54488 * 282.53976 * 16 15 14 29 29 H 1.09007 * 117.49567 * 359.97438 * 17 16 15 30 30 H 1.08997 * 117.49902 * 145.01421 * 17 16 15 31 31 H 1.09007 * 117.49544 * 214.97650 * 18 16 15 32 32 H 1.08997 * 117.50207 * 359.97438 * 18 16 15 33 33 H 1.09000 * 110.66968 * 202.36085 * 19 15 14 34 34 H 1.08999 * 110.66957 * 79.22563 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3882 -4.7512 -0.8513 13 6 0.2700 -4.8599 1.3270 14 6 0.1526 -6.3541 1.6804 15 7 0.8166 -7.1098 0.5961 16 6 1.4734 -8.3148 1.1201 17 6 1.3161 -9.6096 0.3203 18 6 0.5757 -9.4358 1.6478 19 6 1.8093 -6.1781 0.0023 20 1 -0.4850 0.8401 -0.0004 21 1 0.3557 -2.3881 0.0005 22 1 2.6849 -3.7145 0.8905 23 1 2.6849 -3.7144 -0.8895 24 1 0.8120 -4.3277 2.1089 25 1 -0.7198 -4.4249 1.1886 26 1 0.6507 -6.5515 2.6295 27 1 -0.8975 -6.6395 1.7426 28 1 2.4232 -8.1491 1.6285 29 1 0.7250 -9.5673 -0.5946 30 1 2.1627 -10.2959 0.3022 31 1 0.9352 -10.0079 2.5032 32 1 -0.5022 -9.2790 1.6066 33 1 2.0601 -6.4801 -1.0145 34 1 2.7051 -6.1248 0.6210 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037904789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:18 Heat of formation + Delta-G solvation = 37.330889 kcal Electronic energy + Delta-G solvation = -13769.933746 eV Core-core repulsion = 11510.551088 eV Total energy + Delta-G solvation = -2259.382658 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.16244 -36.42763 -34.24590 -31.58754 -29.39868 -28.80257 -24.88067 -22.63830 -22.28198 -21.89661 -20.41859 -19.32588 -17.04629 -16.47649 -15.64671 -14.94188 -14.49173 -13.74535 -13.48256 -13.17228 -12.87369 -12.85780 -12.26059 -11.76220 -11.59802 -11.39819 -11.06940 -10.85194 -10.64947 -10.49083 -10.33204 -10.18706 -9.99298 -9.90414 -9.63453 -8.84803 -8.35443 -6.88176 -5.73623 -3.01930 3.45073 3.50503 3.52924 3.69053 3.91844 4.61317 4.83450 4.85800 4.92304 5.07491 5.20776 5.43004 5.48108 5.53812 5.58966 5.60838 5.76411 5.83368 5.92463 6.08574 6.11821 6.14106 6.24373 6.32958 6.47349 6.54031 6.80412 6.92702 7.04198 7.20283 7.73025 8.45510 9.56695 10.15530 10.50685 11.49470 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.088724 B = 0.005461 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.508545 B = 5125.825684 C = 5278.411839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.162 3.838 11 C -0.096 4.096 12 H 0.081 0.919 13 C -0.121 4.121 14 C 0.041 3.959 15 N -0.493 5.493 16 C -0.003 4.003 17 C -0.164 4.164 18 C -0.173 4.173 19 C 0.047 3.953 20 H 0.254 0.746 21 H 0.384 0.616 22 H 0.017 0.983 23 H 0.019 0.981 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -16.787 2.690 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.034 3.966 11 C -0.115 4.115 12 H 0.100 0.900 13 C -0.159 4.159 14 C -0.087 4.087 15 N -0.217 5.217 16 C -0.113 4.113 17 C -0.201 4.201 18 C -0.210 4.210 19 C -0.080 4.080 20 H 0.064 0.936 21 H 0.218 0.782 22 H 0.035 0.965 23 H 0.037 0.963 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.594 -16.851 2.314 17.083 hybrid contribution 0.742 1.194 0.648 1.548 sum 2.336 -15.657 2.963 16.105 Atomic orbital electron populations 1.69675 1.05104 1.25475 1.57992 1.24733 0.95515 0.97653 1.03145 0.86122 0.78773 0.84172 0.77176 1.20586 1.21862 1.21900 1.19291 0.91063 0.84231 1.42370 0.91193 1.42345 1.05920 0.99886 1.89392 1.20634 0.92983 0.85328 0.97646 1.22259 0.97578 0.93538 0.98147 0.90011 1.22407 1.01479 0.94174 0.97880 1.22818 0.99339 0.93709 0.92812 1.64556 1.25757 1.04358 1.27054 1.22597 0.97901 0.87713 1.03071 1.22999 1.02698 0.98458 0.95986 1.22978 0.99072 1.01428 0.97543 1.23187 0.93545 0.91573 0.99742 0.93595 0.78200 0.96519 0.96312 0.90951 0.90911 0.94025 0.90859 0.89669 0.88211 0.89008 0.88978 0.88413 0.90201 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.97 5.45 -59.91 -0.33 -19.29 16 10 C 0.16 3.37 5.59 -4.04 -0.02 3.34 16 11 C -0.10 -1.65 3.13 -88.76 -0.28 -1.92 16 12 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 13 C -0.12 -1.99 6.20 -25.38 -0.16 -2.15 16 14 C 0.04 0.57 6.48 -2.75 -0.02 0.55 16 15 N -0.49 -6.85 5.42 -222.51 -1.21 -8.06 16 16 C 0.00 -0.04 4.87 -67.71 -0.33 -0.37 16 17 C -0.16 -1.64 10.46 -26.73 -0.28 -1.92 16 18 C -0.17 -1.71 10.19 -26.73 -0.27 -1.99 16 19 C 0.05 0.69 6.00 -1.90 -0.01 0.68 16 20 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.38 10.44 7.52 -40.82 -0.31 10.14 16 22 H 0.02 0.35 8.07 -51.93 -0.42 -0.06 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 1.27 7.80 -51.93 -0.41 0.87 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.04 0.55 7.77 -51.93 -0.40 0.15 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.09 0.99 7.97 -51.93 -0.41 0.57 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.65 7.81 -51.93 -0.41 0.25 16 LS Contribution 279.57 15.07 4.21 4.21 Total: -1.00 -30.34 279.57 -8.94 -39.28 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.71 Total: 5.38 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -1.61 Total: -11.27 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.81 Total: -55.28 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.34 -8.94 -39.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037904789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.612 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds