Wall clock time and date at job start Mon Mar 30 2020 02:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99793 * 2 1 4 4 H 1.48495 * 109.47296 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46858 * 300.00121 * 3 2 1 6 6 H 1.48505 * 109.47162 * 59.99806 * 3 2 1 7 7 C 1.38805 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00053 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00313 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47224 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.78146 * 56.79572 * 11 10 9 13 13 C 1.54592 * 110.72305 * 293.54676 * 11 10 9 14 14 C 1.53993 * 105.13918 * 219.68616 * 13 11 10 15 15 N 1.47906 * 107.05680 * 358.77548 * 14 13 11 16 16 C 1.46900 * 110.99936 * 145.84861 * 15 14 13 17 17 C 1.53002 * 117.50082 * 136.83371 * 16 15 14 18 18 C 1.52998 * 117.49897 * 68.20975 * 16 15 14 19 19 C 1.48525 * 105.82089 * 25.33161 * 15 14 13 20 20 H 0.97003 * 120.00007 * 0.02562 * 1 2 3 21 21 H 0.97005 * 120.00281 * 359.97438 * 9 7 2 22 22 H 1.08997 * 109.47486 * 59.99792 * 10 9 7 23 23 H 1.09005 * 109.47002 * 300.00143 * 10 9 7 24 24 H 1.09006 * 110.31079 * 338.59628 * 13 11 10 25 25 H 1.08996 * 110.31180 * 100.76775 * 13 11 10 26 26 H 1.08994 * 109.91965 * 118.12754 * 14 13 11 27 27 H 1.08997 * 109.91566 * 239.42458 * 14 13 11 28 28 H 1.08999 * 115.54488 * 282.53976 * 16 15 14 29 29 H 1.09007 * 117.49567 * 359.97438 * 17 16 15 30 30 H 1.08997 * 117.49902 * 145.01421 * 17 16 15 31 31 H 1.09007 * 117.49544 * 214.97650 * 18 16 15 32 32 H 1.08997 * 117.50207 * 359.97438 * 18 16 15 33 33 H 1.09000 * 110.66968 * 202.36085 * 19 15 14 34 34 H 1.08999 * 110.66957 * 79.22563 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3882 -4.7512 -0.8513 13 6 0.2700 -4.8599 1.3270 14 6 0.1526 -6.3541 1.6804 15 7 0.8166 -7.1098 0.5961 16 6 1.4734 -8.3148 1.1201 17 6 1.3161 -9.6096 0.3203 18 6 0.5757 -9.4358 1.6478 19 6 1.8093 -6.1781 0.0023 20 1 -0.4850 0.8401 -0.0004 21 1 0.3557 -2.3881 0.0005 22 1 2.6849 -3.7145 0.8905 23 1 2.6849 -3.7144 -0.8895 24 1 0.8120 -4.3277 2.1089 25 1 -0.7198 -4.4249 1.1886 26 1 0.6507 -6.5515 2.6295 27 1 -0.8975 -6.6395 1.7426 28 1 2.4232 -8.1491 1.6285 29 1 0.7250 -9.5673 -0.5946 30 1 2.1627 -10.2959 0.3022 31 1 0.9352 -10.0079 2.5032 32 1 -0.5022 -9.2790 1.6066 33 1 2.0601 -6.4801 -1.0145 34 1 2.7051 -6.1248 0.6210 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037904789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:18 Heat of formation + Delta-G solvation = 17.222790 kcal Electronic energy + Delta-G solvation = -13770.805699 eV Core-core repulsion = 11510.551088 eV Total energy + Delta-G solvation = -2260.254611 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.30517 -37.60414 -35.99856 -33.44108 -30.93500 -30.15869 -26.71623 -24.22667 -23.42529 -22.91972 -21.55847 -20.65167 -19.12898 -17.49717 -17.05298 -16.44072 -15.93621 -15.23870 -15.07578 -14.79634 -14.37539 -14.20065 -13.45551 -13.13379 -13.02531 -12.80272 -12.61162 -12.31595 -12.14480 -12.09821 -11.83670 -11.67894 -11.47745 -11.27297 -10.95261 -10.89751 -9.41526 -9.01064 -7.96010 -5.25261 1.47040 1.48104 1.58353 2.54957 2.84000 2.92567 3.37490 3.60537 3.79656 3.92818 4.04933 4.15750 4.20492 4.33331 4.39301 4.52134 4.65051 4.72033 4.81062 4.82221 4.86984 4.90310 5.04628 5.08888 5.14897 5.29211 5.34231 5.40637 5.48733 5.85270 6.18008 6.26561 7.32544 8.08024 8.32391 9.27943 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.088724 B = 0.005461 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.508545 B = 5125.825684 C = 5278.411839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.075 0.925 9 N -0.744 5.744 10 C 0.163 3.837 11 C -0.090 4.090 12 H 0.070 0.930 13 C -0.119 4.119 14 C 0.049 3.951 15 N -0.500 5.500 16 C -0.025 4.025 17 C -0.156 4.156 18 C -0.162 4.162 19 C 0.057 3.943 20 H 0.252 0.748 21 H 0.374 0.626 22 H 0.019 0.981 23 H 0.021 0.979 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.841 -18.068 2.987 18.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.386 5.386 10 C 0.036 3.964 11 C -0.110 4.110 12 H 0.088 0.912 13 C -0.157 4.157 14 C -0.078 4.078 15 N -0.224 5.224 16 C -0.134 4.134 17 C -0.193 4.193 18 C -0.200 4.200 19 C -0.071 4.071 20 H 0.061 0.939 21 H 0.206 0.794 22 H 0.037 0.963 23 H 0.039 0.961 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.636 -18.170 2.611 18.545 hybrid contribution 0.440 1.522 0.555 1.679 sum 3.076 -16.648 3.166 17.223 Atomic orbital electron populations 1.69832 1.06678 1.26071 1.59490 1.25584 0.96411 1.01148 1.03556 0.85049 0.78199 0.79612 0.76741 1.19031 1.21897 1.21916 1.19698 0.91539 0.85421 1.41320 0.90681 1.42547 1.05667 1.01084 1.89351 1.20753 0.93521 0.84624 0.97483 1.22114 0.96965 0.93804 0.98105 0.91183 1.22331 1.00360 0.96072 0.96978 1.22734 1.00131 0.91659 0.93290 1.64558 1.25824 1.04775 1.27234 1.22701 0.98605 0.87286 1.04824 1.23065 1.03156 0.97362 0.95727 1.23053 0.98615 1.00080 0.98226 1.23070 0.93454 0.89987 1.00552 0.93945 0.79377 0.96335 0.96082 0.92484 0.92129 0.93100 0.90009 0.89275 0.88914 0.87105 0.87089 0.88880 0.89354 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 2 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 3 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 7 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -39.10 5.45 -343.45 -1.87 -40.97 16 10 C 0.16 6.76 5.59 86.38 0.48 7.25 16 11 C -0.09 -3.10 3.13 -9.59 -0.03 -3.13 16 12 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 13 C -0.12 -3.92 6.20 31.47 0.20 -3.72 16 14 C 0.05 1.31 6.48 86.45 0.56 1.87 16 15 N -0.50 -13.03 5.42 -857.88 -4.65 -17.67 16 16 C -0.03 -0.53 4.87 44.92 0.22 -0.31 16 17 C -0.16 -2.70 10.46 30.60 0.32 -2.38 16 18 C -0.16 -2.77 10.19 30.59 0.31 -2.46 16 19 C 0.06 1.60 6.00 86.65 0.52 2.12 16 20 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 21 H 0.37 20.89 7.52 -92.70 -0.70 20.19 16 22 H 0.02 0.77 8.07 -2.39 -0.02 0.76 16 23 H 0.02 0.87 8.14 -2.38 -0.02 0.86 16 24 H 0.06 2.03 7.80 -2.38 -0.02 2.01 16 25 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.05 1.26 7.77 -2.39 -0.02 1.24 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.09 1.83 7.97 -2.39 -0.02 1.81 16 29 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.05 1.36 7.81 -2.39 -0.02 1.34 16 Total: -1.00 -63.84 279.57 0.04 -63.80 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.36 Total: 24.27 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 3.88 Total: -18.05 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -6.23 Total: -118.76 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -63.84 0.04 -63.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037904789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.022 kcal (2) G-P(sol) polarization free energy of solvation -63.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds