Wall clock time and date at job start Mon Mar 30 2020 02:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00329 * 2 1 4 4 H 1.48501 * 109.47218 * 269.99695 * 3 2 1 5 5 H 1.48503 * 109.47010 * 29.99294 * 3 2 1 6 6 H 1.48504 * 109.47422 * 149.99220 * 3 2 1 7 7 C 1.37883 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00315 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47409 * 179.97438 * 9 7 2 11 11 C 1.48711 * 111.00233 * 189.99599 * 10 9 7 12 12 H 1.08998 * 112.23715 * 44.15726 * 11 10 9 13 13 C 1.54611 * 104.22694 * 282.49112 * 11 10 9 14 14 C 1.54289 * 104.93324 * 334.76509 * 13 11 10 15 15 C 1.48716 * 110.99807 * 75.53239 * 10 9 7 16 16 H 1.08997 * 112.23690 * 315.21812 * 15 10 9 17 17 C 1.53717 * 107.23951 * 191.66040 * 15 10 9 18 18 C 1.53139 * 108.88035 * 295.90777 * 17 15 10 19 19 N 1.46910 * 109.42532 * 174.04148 * 18 17 15 20 20 C 1.53134 * 109.73289 * 54.01791 * 18 17 15 21 21 H 0.96999 * 119.99445 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47778 * 59.99126 * 9 7 2 23 23 H 1.09010 * 109.47054 * 299.99289 * 9 7 2 24 24 H 1.09002 * 110.36735 * 93.66054 * 13 11 10 25 25 H 1.09005 * 110.36563 * 215.86975 * 13 11 10 26 26 H 1.09003 * 110.36637 * 118.90061 * 14 13 11 27 27 H 1.09003 * 110.36089 * 241.21223 * 14 13 11 28 28 H 1.08994 * 109.56862 * 55.72741 * 17 15 10 29 29 H 1.08997 * 109.56922 * 175.97138 * 17 15 10 30 30 H 1.08998 * 109.42820 * 293.93416 * 18 17 15 31 31 H 1.00896 * 110.99829 * 180.02562 * 19 18 17 32 32 H 1.00902 * 110.99816 * 303.95072 * 19 18 17 33 33 H 1.08998 * 109.57245 * 186.15948 * 20 18 17 34 34 H 1.09004 * 109.56996 * 65.80047 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5126 -4.9093 -0.2404 12 1 0.7799 -4.8412 -1.0445 13 6 0.8589 -5.2492 1.1188 14 6 1.7193 -4.5152 2.1684 15 6 2.8155 -3.7955 1.3449 16 1 3.1221 -2.8483 1.7887 17 6 3.9951 -4.7678 1.1837 18 6 3.4567 -6.1308 0.7394 19 7 4.5819 -7.0280 0.4441 20 6 2.5974 -5.9627 -0.5169 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5572 -0.8895 23 1 0.6241 -2.5568 0.8904 24 1 -0.1678 -4.8845 1.1477 25 1 0.8836 -6.3249 1.2932 26 1 1.1155 -3.7895 2.7134 27 1 2.1685 -5.2302 2.8577 28 1 4.6840 -4.3844 0.4311 29 1 4.5154 -4.8716 2.1359 30 1 2.8513 -6.5593 1.5381 31 1 4.2532 -7.9348 0.1480 32 1 5.1956 -6.6229 -0.2469 33 1 2.1274 -6.9136 -0.7677 34 1 3.2235 -5.6330 -1.3461 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040750451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:48 Heat of formation + Delta-G solvation = -1.417747 kcal Electronic energy + Delta-G solvation = -14731.012252 eV Core-core repulsion = 12469.949326 eV Total energy + Delta-G solvation = -2261.062925 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.18704 -34.95591 -32.82537 -30.77030 -30.41915 -28.78717 -26.21006 -23.76451 -22.75609 -20.89006 -19.79679 -18.24408 -16.21968 -15.99468 -15.78900 -14.59723 -14.32755 -13.64780 -13.33429 -13.15782 -12.68034 -12.13316 -12.09629 -12.02035 -11.51310 -11.12729 -10.96732 -10.80843 -10.51600 -10.32226 -10.25414 -9.93613 -9.83357 -9.63484 -9.17252 -8.49184 -8.41749 -7.39030 -6.00714 -4.01490 3.33094 3.38939 3.42860 4.43684 4.71269 4.75428 5.16338 5.29975 5.34122 5.40518 5.53234 5.62741 5.65705 5.70904 5.88753 6.08627 6.11056 6.27762 6.30946 6.38066 6.45201 6.57273 6.66513 6.77495 6.78526 7.20702 7.29530 7.41270 7.56186 7.81625 8.02997 8.22573 8.55845 9.06789 9.62518 11.10193 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048171 B = 0.008852 C = 0.008295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.124087 B = 3162.242921 C = 3374.523647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.183 3.817 10 N -0.498 5.498 11 C 0.061 3.939 12 H 0.083 0.917 13 C -0.147 4.147 14 C -0.147 4.147 15 C 0.072 3.928 16 H 0.098 0.902 17 C -0.098 4.098 18 C 0.090 3.910 19 N -0.848 5.848 20 C -0.136 4.136 21 H 0.260 0.740 22 H 0.025 0.975 23 H -0.002 1.002 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.334 0.666 32 H 0.337 0.663 33 H 0.052 0.948 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 -11.404 1.573 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.057 3.943 10 N -0.221 5.221 11 C -0.050 4.050 12 H 0.101 0.899 13 C -0.186 4.186 14 C -0.186 4.186 15 C -0.038 4.038 16 H 0.116 0.884 17 C -0.136 4.136 18 C -0.021 4.021 19 N -0.375 5.375 20 C -0.176 4.176 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.016 0.984 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.070 0.930 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.853 -11.046 1.919 12.217 hybrid contribution -0.832 0.796 -0.412 1.223 sum 4.021 -10.249 1.508 11.113 Atomic orbital electron populations 1.69963 1.06048 1.26667 1.51295 1.24988 0.94850 0.99265 0.95576 0.86517 0.79734 0.83180 0.78094 1.20694 1.21359 1.19851 1.21152 0.93490 0.89951 1.49648 0.92006 1.19807 0.90485 0.87772 0.96234 1.65469 1.29801 1.01868 1.24953 1.22950 0.94229 0.91600 0.96191 0.89905 1.22918 0.99730 0.99427 0.96499 1.22950 0.98219 0.99178 0.98299 1.22961 0.93515 0.97470 0.89864 0.88350 1.21698 0.97710 0.93281 1.00922 1.21627 0.90605 0.93427 0.96464 1.59045 1.20384 1.06219 1.51895 1.22487 0.98386 0.97640 0.99043 0.93008 0.95652 0.98394 0.92124 0.92252 0.91821 0.91996 0.91551 0.92068 0.90322 0.85477 0.85037 0.92971 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.50 -14.26 8.65 -34.44 -0.30 -14.56 16 8 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 9 C 0.18 4.76 4.41 -4.98 -0.02 4.74 16 10 N -0.50 -10.69 4.95 -214.23 -1.06 -11.75 16 11 C 0.06 1.09 3.68 -65.49 -0.24 0.85 16 12 H 0.08 1.53 7.98 -51.93 -0.41 1.11 16 13 C -0.15 -2.43 5.44 -25.21 -0.14 -2.57 16 14 C -0.15 -2.54 5.27 -25.08 -0.13 -2.67 16 15 C 0.07 1.37 3.53 -65.36 -0.23 1.14 16 16 H 0.10 2.08 7.59 -51.93 -0.39 1.69 16 17 C -0.10 -1.57 5.16 -26.29 -0.14 -1.71 16 18 C 0.09 1.26 2.89 -67.57 -0.19 1.07 16 19 N -0.85 -10.21 9.25 -4.54 -0.04 -10.26 16 20 C -0.14 -2.00 5.19 -26.29 -0.14 -2.14 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.03 0.72 7.97 -51.93 -0.41 0.30 16 23 H 0.00 -0.05 6.90 -51.92 -0.36 -0.41 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.06 0.85 7.04 -51.93 -0.37 0.48 16 26 H 0.06 1.18 7.89 -51.93 -0.41 0.77 16 27 H 0.06 0.93 7.04 -51.93 -0.37 0.57 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.13 5.51 -51.93 -0.29 0.84 16 31 H 0.33 3.40 9.03 -39.29 -0.35 3.04 16 32 H 0.34 3.86 8.98 -39.29 -0.35 3.51 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 260.79 15.07 3.93 3.93 Total: -1.00 -29.46 260.79 -8.46 -37.92 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.37 Total: 3.92 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -1.63 Total: -14.40 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.37 Total: -48.20 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.46 -8.46 -37.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040750451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.502 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds