Wall clock time and date at job start Mon Mar 30 2020 02:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00329 * 2 1 4 4 H 1.48501 * 109.47218 * 269.99695 * 3 2 1 5 5 H 1.48503 * 109.47010 * 29.99294 * 3 2 1 6 6 H 1.48504 * 109.47422 * 149.99220 * 3 2 1 7 7 C 1.37883 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00315 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47409 * 179.97438 * 9 7 2 11 11 C 1.48711 * 111.00233 * 189.99599 * 10 9 7 12 12 H 1.08998 * 112.23715 * 44.15726 * 11 10 9 13 13 C 1.54611 * 104.22694 * 282.49112 * 11 10 9 14 14 C 1.54289 * 104.93324 * 334.76509 * 13 11 10 15 15 C 1.48716 * 110.99807 * 75.53239 * 10 9 7 16 16 H 1.08997 * 112.23690 * 315.21812 * 15 10 9 17 17 C 1.53717 * 107.23951 * 191.66040 * 15 10 9 18 18 C 1.53139 * 108.88035 * 295.90777 * 17 15 10 19 19 N 1.46910 * 109.42532 * 174.04148 * 18 17 15 20 20 C 1.53134 * 109.73289 * 54.01791 * 18 17 15 21 21 H 0.96999 * 119.99445 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47778 * 59.99126 * 9 7 2 23 23 H 1.09010 * 109.47054 * 299.99289 * 9 7 2 24 24 H 1.09002 * 110.36735 * 93.66054 * 13 11 10 25 25 H 1.09005 * 110.36563 * 215.86975 * 13 11 10 26 26 H 1.09003 * 110.36637 * 118.90061 * 14 13 11 27 27 H 1.09003 * 110.36089 * 241.21223 * 14 13 11 28 28 H 1.08994 * 109.56862 * 55.72741 * 17 15 10 29 29 H 1.08997 * 109.56922 * 175.97138 * 17 15 10 30 30 H 1.08998 * 109.42820 * 293.93416 * 18 17 15 31 31 H 1.00896 * 110.99829 * 180.02562 * 19 18 17 32 32 H 1.00902 * 110.99816 * 303.95072 * 19 18 17 33 33 H 1.08998 * 109.57245 * 186.15948 * 20 18 17 34 34 H 1.09004 * 109.56996 * 65.80047 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5126 -4.9093 -0.2404 12 1 0.7799 -4.8412 -1.0445 13 6 0.8589 -5.2492 1.1188 14 6 1.7193 -4.5152 2.1684 15 6 2.8155 -3.7955 1.3449 16 1 3.1221 -2.8483 1.7887 17 6 3.9951 -4.7678 1.1837 18 6 3.4567 -6.1308 0.7394 19 7 4.5819 -7.0280 0.4441 20 6 2.5974 -5.9627 -0.5169 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5572 -0.8895 23 1 0.6241 -2.5568 0.8904 24 1 -0.1678 -4.8845 1.1477 25 1 0.8836 -6.3249 1.2932 26 1 1.1155 -3.7895 2.7134 27 1 2.1685 -5.2302 2.8577 28 1 4.6840 -4.3844 0.4311 29 1 4.5154 -4.8716 2.1359 30 1 2.8513 -6.5593 1.5381 31 1 4.2532 -7.9348 0.1480 32 1 5.1956 -6.6229 -0.2469 33 1 2.1274 -6.9136 -0.7677 34 1 3.2235 -5.6330 -1.3461 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040750451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:48 Heat of formation + Delta-G solvation = -23.466824 kcal Electronic energy + Delta-G solvation = -14731.968371 eV Core-core repulsion = 12469.949326 eV Total energy + Delta-G solvation = -2262.019045 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.63106 -36.33125 -34.83370 -32.17198 -32.15400 -30.03736 -28.16024 -25.10873 -24.55178 -22.44376 -21.26976 -19.61076 -18.38544 -17.41236 -17.14610 -16.36959 -15.73998 -15.17978 -14.91863 -14.44602 -14.06933 -14.00039 -13.61981 -13.46043 -13.30658 -12.82635 -12.60354 -12.47791 -12.20762 -11.93161 -11.73479 -11.54730 -11.33348 -11.22084 -11.01807 -10.62267 -9.52272 -9.13334 -8.21706 -6.31518 1.38441 1.39976 1.51241 2.38676 3.10065 3.25211 3.61379 3.80873 3.98033 4.05664 4.25225 4.28900 4.29649 4.46874 4.51331 4.72945 4.76416 4.95674 4.97188 4.99693 5.07461 5.15017 5.24014 5.28538 5.31298 5.41870 5.52452 5.65321 6.04644 6.28355 6.34688 6.58263 6.71169 6.85325 7.38166 8.89276 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048171 B = 0.008852 C = 0.008295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.124087 B = 3162.242921 C = 3374.523647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.202 3.798 10 N -0.511 5.511 11 C 0.051 3.949 12 H 0.069 0.931 13 C -0.140 4.140 14 C -0.142 4.142 15 C 0.065 3.935 16 H 0.067 0.933 17 C -0.089 4.089 18 C 0.100 3.900 19 N -0.844 5.844 20 C -0.125 4.125 21 H 0.264 0.736 22 H -0.007 1.007 23 H -0.028 1.028 24 H 0.042 0.958 25 H 0.095 0.905 26 H 0.039 0.961 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.349 0.651 32 H 0.342 0.658 33 H 0.082 0.918 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.799 -12.865 1.927 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.075 3.925 10 N -0.234 5.234 11 C -0.059 4.059 12 H 0.087 0.913 13 C -0.179 4.179 14 C -0.181 4.181 15 C -0.045 4.045 16 H 0.086 0.914 17 C -0.128 4.128 18 C -0.012 4.012 19 N -0.373 5.373 20 C -0.165 4.165 21 H 0.073 0.927 22 H 0.011 0.989 23 H -0.010 1.010 24 H 0.061 0.939 25 H 0.114 0.886 26 H 0.058 0.942 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.100 0.900 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.272 -12.541 2.271 14.204 hybrid contribution -1.278 1.217 -0.534 1.844 sum 4.995 -11.324 1.737 12.497 Atomic orbital electron populations 1.70090 1.07698 1.27813 1.51978 1.25913 0.95752 1.03160 0.94890 0.85403 0.78566 0.78331 0.78451 1.19873 1.20612 1.18917 1.21456 0.93434 0.91340 1.49773 0.92437 1.19394 0.90433 0.89394 0.93310 1.65417 1.28932 1.02276 1.26785 1.23105 0.95291 0.90811 0.96666 0.91252 1.22871 0.98346 1.01405 0.95235 1.22903 0.97435 0.99180 0.98547 1.22976 0.95327 0.97384 0.88814 0.91436 1.21606 0.96012 0.93630 1.01507 1.21460 0.91037 0.92522 0.96135 1.58977 1.19382 1.06524 1.52394 1.22449 0.97246 0.97503 0.99289 0.92734 0.98926 1.01025 0.93899 0.88610 0.94214 0.88814 0.92600 0.90620 0.89458 0.83766 0.84516 0.89970 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.52 13.29 21.45 0.28 -57.24 16 2 C 0.00 0.03 5.46 84.66 0.46 0.50 16 3 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.52 -30.54 8.65 25.60 0.22 -30.32 16 8 H 0.06 3.34 7.81 -2.91 -0.02 3.31 16 9 C 0.20 11.04 4.41 85.55 0.38 11.42 16 10 N -0.51 -22.46 4.95 -831.68 -4.12 -26.58 16 11 C 0.05 1.81 3.68 45.35 0.17 1.98 16 12 H 0.07 2.61 7.98 -2.39 -0.02 2.59 16 13 C -0.14 -4.46 5.44 31.58 0.17 -4.29 16 14 C -0.14 -4.77 5.27 31.66 0.17 -4.61 16 15 C 0.06 2.48 3.53 45.44 0.16 2.64 16 16 H 0.07 2.96 7.59 -2.39 -0.02 2.95 16 17 C -0.09 -2.70 5.16 30.88 0.16 -2.54 16 18 C 0.10 2.47 2.89 45.00 0.13 2.60 16 19 N -0.84 -17.02 9.25 -168.28 -1.56 -18.58 16 20 C -0.13 -3.36 5.19 30.88 0.16 -3.20 16 21 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 22 H -0.01 -0.44 7.97 -2.39 -0.02 -0.46 16 23 H -0.03 -1.64 6.90 -2.38 -0.02 -1.66 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.10 2.38 7.04 -2.38 -0.02 2.36 16 26 H 0.04 1.50 7.89 -2.39 -0.02 1.48 16 27 H 0.09 2.55 7.04 -2.39 -0.02 2.54 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.09 2.08 5.51 -2.39 -0.01 2.07 16 31 H 0.35 5.54 9.03 -89.70 -0.81 4.73 16 32 H 0.34 6.67 8.98 -89.69 -0.81 5.87 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -65.15 260.79 -1.71 -66.86 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -0.52 Total: 13.99 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 2.18 Total: -25.82 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -5.39 Total: -102.39 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -65.15 -1.71 -66.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040750451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.396 kcal (2) G-P(sol) polarization free energy of solvation -65.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds