Wall clock time and date at job start Mon Mar 30 2020 02:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99850 * 2 1 4 4 H 1.48503 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47464 * 299.99706 * 3 2 1 6 6 H 1.48501 * 109.47226 * 59.99996 * 3 2 1 7 7 C 1.38805 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99875 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00073 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99837 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.80632 * 31.37090 * 10 9 7 12 12 C 1.55479 * 110.87421 * 267.68218 * 10 9 7 13 13 C 1.54807 * 104.91875 * 219.56553 * 12 10 9 14 14 N 1.46339 * 106.02122 * 356.41473 * 13 12 10 15 15 C 1.45533 * 117.21716 * 151.89742 * 14 13 12 16 16 C 1.53641 * 107.85507 * 174.44534 * 15 14 13 17 17 C 1.52821 * 110.64526 * 57.13126 * 16 15 14 18 18 C 1.53628 * 110.61465 * 306.13327 * 17 16 15 19 19 C 1.48654 * 105.49789 * 29.46981 * 14 13 12 20 20 H 1.09005 * 111.11882 * 75.21473 * 19 14 13 21 21 H 0.97009 * 119.99994 * 0.02562 * 1 2 3 22 22 H 0.96992 * 119.99829 * 0.02562 * 9 7 2 23 23 H 1.09002 * 110.35676 * 100.72160 * 12 10 9 24 24 H 1.08997 * 110.39071 * 338.42896 * 12 10 9 25 25 H 1.09002 * 110.15530 * 237.25463 * 13 12 10 26 26 H 1.09000 * 110.15260 * 115.57472 * 13 12 10 27 27 H 1.08993 * 109.78483 * 294.03323 * 15 14 13 28 28 H 1.08997 * 109.78454 * 54.85684 * 15 14 13 29 29 H 1.09001 * 109.24022 * 177.43591 * 16 15 14 30 30 H 1.08997 * 109.23998 * 296.86848 * 16 15 14 31 31 H 1.08999 * 109.24931 * 66.42742 * 17 16 15 32 32 H 1.09008 * 109.24449 * 185.87944 * 17 16 15 33 33 H 1.08999 * 109.83506 * 175.93661 * 18 17 16 34 34 H 1.09000 * 109.83255 * 296.82093 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0050 -3.5571 0.5299 12 6 2.2841 -4.1659 -1.4521 13 6 2.0707 -5.6973 -1.3751 14 7 1.8377 -6.0021 0.0371 15 6 1.0213 -7.1680 0.3405 16 6 1.0326 -7.3675 1.8639 17 6 0.5275 -6.1129 2.5753 18 6 1.3218 -4.8780 2.1233 19 6 1.2040 -4.7842 0.6071 20 1 0.1606 -4.7048 0.3017 21 1 -0.4850 0.8401 -0.0004 22 1 0.3555 -2.3880 -0.0005 23 1 3.2993 -3.9409 -1.7790 24 1 1.5585 -3.7160 -2.1297 25 1 2.9596 -6.2187 -1.7302 26 1 1.2039 -5.9860 -1.9696 27 1 0.0000 -7.0026 -0.0023 28 1 1.4379 -8.0478 -0.1498 29 1 0.3898 -8.2095 2.1207 30 1 2.0504 -7.5800 2.1908 31 1 -0.5271 -5.9671 2.3416 32 1 0.6428 -6.2393 3.6519 33 1 0.9052 -3.9817 2.5828 34 1 2.3684 -4.9869 2.4078 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049565446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:40 Heat of formation + Delta-G solvation = 7.205783 kcal Electronic energy + Delta-G solvation = -14451.801369 eV Core-core repulsion = 12191.112388 eV Total energy + Delta-G solvation = -2260.688981 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.49629 -35.17164 -33.62201 -31.72783 -29.72812 -28.62533 -25.99878 -23.24483 -22.71942 -21.12183 -19.74679 -19.42469 -17.10625 -15.57438 -15.09328 -14.55983 -14.34126 -14.00374 -13.35757 -13.11825 -12.95069 -12.58922 -12.32332 -11.80962 -11.52753 -11.02062 -10.88966 -10.78285 -10.70871 -10.50709 -10.24998 -10.10530 -9.95974 -9.72071 -9.61297 -8.86464 -7.96753 -6.93652 -5.75570 -3.04219 3.44431 3.50373 3.52478 4.27052 4.63346 4.98393 5.05863 5.11813 5.46360 5.46840 5.52261 5.65609 5.69270 5.75750 5.80780 5.87224 5.97416 6.04859 6.13928 6.20122 6.30764 6.37701 6.49405 6.53030 6.56745 6.76264 6.83481 7.01030 7.41921 7.63232 7.74324 8.43180 9.54085 10.11889 10.46463 11.47144 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048104 B = 0.008115 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.937132 B = 3449.700998 C = 3767.451454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.187 3.813 11 H 0.065 0.935 12 C -0.153 4.153 13 C 0.053 3.947 14 N -0.539 5.539 15 C 0.062 3.938 16 C -0.112 4.112 17 C -0.120 4.120 18 C -0.100 4.100 19 C 0.063 3.937 20 H 0.050 0.950 21 H 0.254 0.746 22 H 0.383 0.617 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.029 0.971 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 -13.274 1.634 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.076 3.924 11 H 0.083 0.917 12 C -0.194 4.194 13 C -0.075 4.075 14 N -0.264 5.264 15 C -0.067 4.067 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.138 4.138 19 C -0.046 4.046 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.217 0.783 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.507 -13.259 1.854 13.621 hybrid contribution -0.709 0.962 -0.568 1.323 sum 1.798 -12.297 1.286 12.494 Atomic orbital electron populations 1.69679 1.05108 1.25497 1.57926 1.24742 0.95512 0.97688 1.03082 0.86123 0.78829 0.84153 0.77133 1.20527 1.21947 1.21899 1.19314 0.91079 0.84011 1.42335 0.91029 1.42371 1.05685 0.99728 1.87982 1.20956 0.94618 0.84988 0.91885 0.91686 1.23484 1.01605 0.92563 1.01729 1.22472 0.99404 0.97489 0.88141 1.62681 1.47045 1.03109 1.13567 1.21902 0.94939 0.93569 0.96294 1.21571 1.01534 0.97392 0.94444 1.21598 0.99607 0.95194 0.99416 1.21437 1.00604 0.97170 0.94562 1.22810 0.96717 0.90186 0.94851 0.93183 0.93605 0.78310 0.92133 0.91355 0.91474 0.95293 0.95402 0.91476 0.92322 0.91479 0.92689 0.92320 0.91024 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.57 9.96 -15.06 -0.15 -6.72 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.72 -18.15 5.19 -51.68 -0.27 -18.41 16 10 C 0.19 3.88 3.26 -66.13 -0.22 3.66 16 11 H 0.07 1.40 8.05 -51.92 -0.42 0.98 16 12 C -0.15 -2.85 6.74 -24.46 -0.16 -3.01 16 13 C 0.05 0.84 6.86 -3.18 -0.02 0.82 16 14 N -0.54 -8.61 4.65 -225.05 -1.05 -9.66 16 15 C 0.06 0.83 5.85 -4.23 -0.02 0.81 16 16 C -0.11 -1.37 6.06 -26.49 -0.16 -1.53 16 17 C -0.12 -1.62 5.94 -26.50 -0.16 -1.78 16 18 C -0.10 -1.64 5.68 -26.73 -0.15 -1.79 16 19 C 0.06 1.13 2.23 -66.58 -0.15 0.98 16 20 H 0.05 0.97 7.99 -51.93 -0.41 0.55 16 21 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 22 H 0.38 10.31 7.81 -40.82 -0.32 10.00 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.03 0.44 8.04 -51.93 -0.42 0.03 16 27 H 0.03 0.39 8.04 -51.93 -0.42 -0.03 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 269.26 15.07 4.06 4.06 Total: -1.00 -29.17 269.26 -8.60 -37.77 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.76 Total: 5.37 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.29 Total: -9.07 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.59 Total: -55.59 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.17 -8.60 -37.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049565446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.979 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds