Wall clock time and date at job start Mon Mar 30 2020 02:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99850 * 2 1 4 4 H 1.48503 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47464 * 299.99706 * 3 2 1 6 6 H 1.48501 * 109.47226 * 59.99996 * 3 2 1 7 7 C 1.38805 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99875 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00073 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99837 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.80632 * 31.37090 * 10 9 7 12 12 C 1.55479 * 110.87421 * 267.68218 * 10 9 7 13 13 C 1.54807 * 104.91875 * 219.56553 * 12 10 9 14 14 N 1.46339 * 106.02122 * 356.41473 * 13 12 10 15 15 C 1.45533 * 117.21716 * 151.89742 * 14 13 12 16 16 C 1.53641 * 107.85507 * 174.44534 * 15 14 13 17 17 C 1.52821 * 110.64526 * 57.13126 * 16 15 14 18 18 C 1.53628 * 110.61465 * 306.13327 * 17 16 15 19 19 C 1.48654 * 105.49789 * 29.46981 * 14 13 12 20 20 H 1.09005 * 111.11882 * 75.21473 * 19 14 13 21 21 H 0.97009 * 119.99994 * 0.02562 * 1 2 3 22 22 H 0.96992 * 119.99829 * 0.02562 * 9 7 2 23 23 H 1.09002 * 110.35676 * 100.72160 * 12 10 9 24 24 H 1.08997 * 110.39071 * 338.42896 * 12 10 9 25 25 H 1.09002 * 110.15530 * 237.25463 * 13 12 10 26 26 H 1.09000 * 110.15260 * 115.57472 * 13 12 10 27 27 H 1.08993 * 109.78483 * 294.03323 * 15 14 13 28 28 H 1.08997 * 109.78454 * 54.85684 * 15 14 13 29 29 H 1.09001 * 109.24022 * 177.43591 * 16 15 14 30 30 H 1.08997 * 109.23998 * 296.86848 * 16 15 14 31 31 H 1.08999 * 109.24931 * 66.42742 * 17 16 15 32 32 H 1.09008 * 109.24449 * 185.87944 * 17 16 15 33 33 H 1.08999 * 109.83506 * 175.93661 * 18 17 16 34 34 H 1.09000 * 109.83255 * 296.82093 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0050 -3.5571 0.5299 12 6 2.2841 -4.1659 -1.4521 13 6 2.0707 -5.6973 -1.3751 14 7 1.8377 -6.0021 0.0371 15 6 1.0213 -7.1680 0.3405 16 6 1.0326 -7.3675 1.8639 17 6 0.5275 -6.1129 2.5753 18 6 1.3218 -4.8780 2.1233 19 6 1.2040 -4.7842 0.6071 20 1 0.1606 -4.7048 0.3017 21 1 -0.4850 0.8401 -0.0004 22 1 0.3555 -2.3880 -0.0005 23 1 3.2993 -3.9409 -1.7790 24 1 1.5585 -3.7160 -2.1297 25 1 2.9596 -6.2187 -1.7302 26 1 1.2039 -5.9860 -1.9696 27 1 0.0000 -7.0026 -0.0023 28 1 1.4379 -8.0478 -0.1498 29 1 0.3898 -8.2095 2.1207 30 1 2.0504 -7.5800 2.1908 31 1 -0.5271 -5.9671 2.3416 32 1 0.6428 -6.2393 3.6519 33 1 0.9052 -3.9817 2.5828 34 1 2.3684 -4.9869 2.4078 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049565446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:39 Heat of formation + Delta-G solvation = -11.994290 kcal Electronic energy + Delta-G solvation = -14452.633946 eV Core-core repulsion = 12191.112388 eV Total energy + Delta-G solvation = -2261.521559 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.84980 -36.74975 -35.21611 -33.43196 -31.40632 -29.98198 -27.60954 -25.19200 -23.95009 -22.38728 -21.35939 -20.70508 -19.14946 -17.11695 -16.58909 -16.03253 -15.84563 -15.46229 -14.95044 -14.56339 -14.25692 -14.23445 -13.63525 -13.28941 -13.09772 -12.88352 -12.68360 -12.22044 -12.14520 -12.07322 -11.81353 -11.64234 -11.48117 -11.25756 -11.11745 -10.87358 -9.25230 -9.00877 -7.94914 -5.23802 1.47470 1.47946 1.58287 2.54865 3.02296 3.37793 3.68813 3.85136 3.99554 4.06260 4.22245 4.30024 4.33726 4.41481 4.46006 4.60393 4.72057 4.77072 4.85066 4.98144 5.04176 5.09271 5.15557 5.19312 5.26621 5.36595 5.44387 5.51272 5.53211 6.01941 6.27722 6.41212 7.32672 8.07203 8.31483 9.28796 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048104 B = 0.008115 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.937132 B = 3449.700998 C = 3767.451454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.238 4.238 8 H 0.075 0.925 9 N -0.729 5.729 10 C 0.177 3.823 11 H 0.055 0.945 12 C -0.148 4.148 13 C 0.060 3.940 14 N -0.538 5.538 15 C 0.056 3.944 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.098 4.098 19 C 0.070 3.930 20 H 0.033 0.967 21 H 0.251 0.749 22 H 0.371 0.629 23 H 0.065 0.935 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.036 0.964 27 H 0.024 0.976 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 -14.983 1.806 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.368 5.368 10 C 0.068 3.932 11 H 0.073 0.927 12 C -0.189 4.189 13 C -0.068 4.068 14 N -0.263 5.263 15 C -0.071 4.071 16 C -0.144 4.144 17 C -0.154 4.154 18 C -0.136 4.136 19 C -0.038 4.038 20 H 0.051 0.949 21 H 0.059 0.941 22 H 0.203 0.797 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.517 -15.019 2.024 15.557 hybrid contribution -0.988 1.426 -0.629 1.845 sum 2.529 -13.593 1.395 13.896 Atomic orbital electron populations 1.69833 1.06620 1.25933 1.59737 1.25550 0.96373 1.01037 1.03818 0.85080 0.78268 0.79840 0.76626 1.19029 1.22114 1.22016 1.19662 0.91405 0.85111 1.40763 0.90674 1.42497 1.05208 1.00825 1.88246 1.21147 0.94287 0.84278 0.93532 0.92651 1.23320 1.01243 0.94877 0.99439 1.22448 1.00809 0.95133 0.88412 1.62737 1.47308 1.02911 1.13383 1.22084 0.94472 0.93018 0.97565 1.21566 1.02351 0.97348 0.93137 1.21580 0.98808 0.94347 1.00709 1.21394 1.00988 0.97908 0.93340 1.22593 0.95154 0.90205 0.95897 0.94947 0.94066 0.79718 0.91630 0.93386 0.89090 0.94559 0.95782 0.89175 0.89582 0.91068 0.93035 0.90551 0.93427 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 3 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.24 -13.42 9.96 84.03 0.84 -12.58 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.73 -37.84 5.19 -317.42 -1.65 -39.49 16 10 C 0.18 7.43 3.26 46.16 0.15 7.58 16 11 H 0.06 2.41 8.05 -2.38 -0.02 2.39 16 12 C -0.15 -5.46 6.74 32.06 0.22 -5.24 16 13 C 0.06 1.77 6.86 87.03 0.60 2.37 16 14 N -0.54 -16.09 4.65 -865.93 -4.03 -20.11 16 15 C 0.06 1.36 5.85 86.78 0.51 1.86 16 16 C -0.11 -2.25 6.06 30.75 0.19 -2.06 16 17 C -0.12 -2.92 5.94 30.75 0.18 -2.74 16 18 C -0.10 -3.19 5.68 30.60 0.17 -3.01 16 19 C 0.07 2.51 2.23 44.68 0.10 2.61 16 20 H 0.03 1.27 7.99 -2.38 -0.02 1.25 16 21 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 22 H 0.37 20.78 7.81 -92.71 -0.72 20.05 16 23 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16 25 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.04 1.03 8.04 -2.39 -0.02 1.01 16 27 H 0.02 0.61 8.04 -2.39 -0.02 0.59 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -62.64 269.26 0.39 -62.26 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.33 Total: 23.60 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 3.42 Total: -15.15 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -5.39 Total: -119.42 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -62.64 0.39 -62.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049565446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.262 kcal (2) G-P(sol) polarization free energy of solvation -62.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds