Wall clock time and date at job start Mon Mar 30 2020 02:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46724 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99926 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.31399 * 34.29674 * 11 10 9 13 13 C 1.53929 * 110.35756 * 272.09578 * 11 10 9 14 14 C 1.53477 * 105.75855 * 224.94038 * 13 11 10 15 15 N 1.47479 * 108.22122 * 0.69188 * 14 13 11 16 16 C 1.47904 * 109.00750 * 132.44544 * 15 14 13 17 17 C 1.54270 * 107.41992 * 247.37047 * 16 15 14 18 18 C 1.55255 * 103.10464 * 20.66578 * 17 16 15 19 19 C 1.48446 * 107.70757 * 15.80062 * 15 14 13 20 20 H 1.09000 * 111.78929 * 211.96570 * 19 15 14 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 23 23 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 24 24 H 1.00903 * 111.00126 * 56.04696 * 10 9 7 25 25 H 1.09005 * 110.18660 * 344.01073 * 13 11 10 26 26 H 1.08998 * 110.19594 * 105.78427 * 13 11 10 27 27 H 1.09006 * 109.72683 * 120.39912 * 14 13 11 28 28 H 1.09009 * 109.72660 * 240.98341 * 14 13 11 29 29 H 1.09005 * 109.85377 * 6.82652 * 16 15 14 30 30 H 1.08995 * 109.86215 * 127.90300 * 16 15 14 31 31 H 1.08997 * 110.69552 * 139.07262 * 17 16 15 32 32 H 1.09003 * 110.68756 * 262.26910 * 17 16 15 33 33 H 1.08997 * 111.07074 * 82.10368 * 18 17 16 34 34 H 1.09003 * 111.06890 * 206.08076 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0010 11 6 5.4697 -2.6182 0.0009 12 1 5.8706 -1.7841 0.5770 13 6 6.0064 -2.5796 -1.4413 14 6 7.1034 -3.6509 -1.5066 15 7 7.1967 -4.2967 -0.1840 16 6 7.2173 -5.7645 -0.3650 17 6 5.9031 -6.3207 0.2209 18 6 4.9688 -5.0807 0.2290 19 6 5.9682 -3.9516 0.5746 20 1 6.1604 -3.8804 1.6452 21 1 -0.4850 0.8400 -0.0004 22 1 3.8753 -0.6803 -0.8889 23 1 3.8746 -0.6799 0.8911 24 1 3.6261 -3.0951 -0.7807 25 1 5.2086 -2.8146 -2.1459 26 1 6.4245 -1.5973 -1.6610 27 1 6.8474 -4.3942 -2.2617 28 1 8.0571 -3.1862 -1.7572 29 1 7.2810 -6.0058 -1.4261 30 1 8.0688 -6.1910 0.1652 31 1 5.4974 -7.1044 -0.4188 32 1 6.0596 -6.6915 1.2339 33 1 4.5199 -4.9219 -0.7515 34 1 4.2019 -5.1729 0.9982 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049568141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:39 Heat of formation + Delta-G solvation = 7.594031 kcal Electronic energy + Delta-G solvation = -14315.549187 eV Core-core repulsion = 12054.877042 eV Total energy + Delta-G solvation = -2260.672145 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.11127 -35.50308 -33.04565 -32.17801 -29.96602 -28.00680 -26.72300 -24.53671 -21.57252 -20.93390 -20.47865 -19.33128 -16.93072 -16.34053 -15.30520 -14.76783 -14.13080 -14.10288 -13.55229 -13.46675 -13.17411 -12.52998 -12.32617 -11.83543 -11.61539 -11.57847 -11.45318 -11.00256 -10.90584 -10.69543 -10.40700 -10.36370 -10.06095 -9.79262 -9.29561 -8.61975 -8.38459 -7.49325 -6.07679 -4.05751 3.27118 3.35037 3.37926 4.13337 4.40576 4.61410 4.70303 5.07652 5.14403 5.16630 5.24337 5.28507 5.34716 5.47193 5.63453 5.66825 5.80914 5.91187 5.96601 6.01449 6.14613 6.23928 6.35768 6.38655 6.55166 6.76473 6.96899 7.04725 7.06251 7.59668 7.87816 8.29178 8.62699 9.00004 9.54315 11.05602 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.054688 B = 0.007533 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.871980 B = 3716.205843 C = 4029.981516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.267 1.267 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.668 5.668 11 C 0.083 3.917 12 H 0.080 0.920 13 C -0.164 4.164 14 C 0.037 3.963 15 N -0.509 5.509 16 C 0.031 3.969 17 C -0.147 4.147 18 C -0.127 4.127 19 C 0.070 3.930 20 H 0.097 0.903 21 H 0.264 0.736 22 H -0.020 1.020 23 H 0.027 0.973 24 H 0.336 0.664 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.608 -8.834 -1.989 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.298 5.298 11 C -0.029 4.029 12 H 0.098 0.902 13 C -0.205 4.205 14 C -0.092 4.092 15 N -0.232 5.232 16 C -0.097 4.097 17 C -0.186 4.186 18 C -0.166 4.166 19 C -0.038 4.038 20 H 0.115 0.885 21 H 0.074 0.926 22 H -0.003 1.003 23 H 0.045 0.955 24 H 0.154 0.846 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.897 -8.581 -1.018 16.364 hybrid contribution -0.166 0.981 -1.452 1.760 sum 13.731 -7.600 -2.469 15.887 Atomic orbital electron populations 1.69900 1.06168 1.26901 1.50952 1.24908 0.94746 0.98964 0.94705 0.86819 0.80368 0.83853 0.78427 1.20392 1.19129 1.21132 1.21059 0.88971 0.94784 1.50665 0.90343 1.20032 0.96552 0.84987 0.94763 1.60550 1.03242 1.16623 1.49370 1.22163 0.90399 0.96847 0.93510 0.90172 1.23090 0.98654 0.99352 0.99367 1.22853 0.98887 0.96607 0.90806 1.65873 1.37518 1.06307 1.13509 1.23210 0.97928 0.88586 1.00002 1.22905 0.95866 0.98525 1.01310 1.22877 0.97938 0.93160 1.02626 1.23216 0.87293 0.94512 0.98783 0.88504 0.92638 1.00280 0.95536 0.84565 0.91350 0.91320 0.93485 0.90990 0.92457 0.90839 0.91494 0.91254 0.91471 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -14.73 9.87 -34.44 -0.34 -15.07 16 8 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.16 3.96 4.35 -4.98 -0.02 3.94 16 10 N -0.67 -13.48 5.45 -107.21 -0.58 -14.06 16 11 C 0.08 1.41 3.07 -66.98 -0.21 1.20 16 12 H 0.08 1.43 7.84 -51.93 -0.41 1.03 16 13 C -0.16 -2.46 6.44 -26.00 -0.17 -2.63 16 14 C 0.04 0.49 6.59 -3.26 -0.02 0.46 16 15 N -0.51 -7.00 5.87 -221.57 -1.30 -8.30 16 16 C 0.03 0.36 6.80 -2.61 -0.02 0.34 16 17 C -0.15 -1.69 6.93 -24.87 -0.17 -1.86 16 18 C -0.13 -1.77 5.36 -24.64 -0.13 -1.91 16 19 C 0.07 1.05 3.97 -65.71 -0.26 0.79 16 20 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 22 H -0.02 -0.49 7.57 -51.93 -0.39 -0.88 16 23 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 24 H 0.34 6.62 6.92 -39.29 -0.27 6.35 16 25 H 0.07 1.04 7.51 -51.93 -0.39 0.65 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.57 6.88 -51.93 -0.36 0.22 16 28 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.06 0.62 6.87 -51.93 -0.36 0.26 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.98 6.95 -51.93 -0.36 0.62 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 263.39 15.07 3.97 3.97 Total: -1.00 -29.69 263.39 -8.70 -38.39 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.46 Total: 2.75 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -1.44 Total: -12.83 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -1.11 Total: -49.28 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.69 -8.70 -38.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049568141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.986 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds