Wall clock time and date at job start Mon Mar 30 2020 02:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46724 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99926 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.31399 * 34.29674 * 11 10 9 13 13 C 1.53929 * 110.35756 * 272.09578 * 11 10 9 14 14 C 1.53477 * 105.75855 * 224.94038 * 13 11 10 15 15 N 1.47479 * 108.22122 * 0.69188 * 14 13 11 16 16 C 1.47904 * 109.00750 * 132.44544 * 15 14 13 17 17 C 1.54270 * 107.41992 * 247.37047 * 16 15 14 18 18 C 1.55255 * 103.10464 * 20.66578 * 17 16 15 19 19 C 1.48446 * 107.70757 * 15.80062 * 15 14 13 20 20 H 1.09000 * 111.78929 * 211.96570 * 19 15 14 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 23 23 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 24 24 H 1.00903 * 111.00126 * 56.04696 * 10 9 7 25 25 H 1.09005 * 110.18660 * 344.01073 * 13 11 10 26 26 H 1.08998 * 110.19594 * 105.78427 * 13 11 10 27 27 H 1.09006 * 109.72683 * 120.39912 * 14 13 11 28 28 H 1.09009 * 109.72660 * 240.98341 * 14 13 11 29 29 H 1.09005 * 109.85377 * 6.82652 * 16 15 14 30 30 H 1.08995 * 109.86215 * 127.90300 * 16 15 14 31 31 H 1.08997 * 110.69552 * 139.07262 * 17 16 15 32 32 H 1.09003 * 110.68756 * 262.26910 * 17 16 15 33 33 H 1.08997 * 111.07074 * 82.10368 * 18 17 16 34 34 H 1.09003 * 111.06890 * 206.08076 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0010 11 6 5.4697 -2.6182 0.0009 12 1 5.8706 -1.7841 0.5770 13 6 6.0064 -2.5796 -1.4413 14 6 7.1034 -3.6509 -1.5066 15 7 7.1967 -4.2967 -0.1840 16 6 7.2173 -5.7645 -0.3650 17 6 5.9031 -6.3207 0.2209 18 6 4.9688 -5.0807 0.2290 19 6 5.9682 -3.9516 0.5746 20 1 6.1604 -3.8804 1.6452 21 1 -0.4850 0.8400 -0.0004 22 1 3.8753 -0.6803 -0.8889 23 1 3.8746 -0.6799 0.8911 24 1 3.6261 -3.0951 -0.7807 25 1 5.2086 -2.8146 -2.1459 26 1 6.4245 -1.5973 -1.6610 27 1 6.8474 -4.3942 -2.2617 28 1 8.0571 -3.1862 -1.7572 29 1 7.2810 -6.0058 -1.4261 30 1 8.0688 -6.1910 0.1652 31 1 5.4974 -7.1044 -0.4188 32 1 6.0596 -6.6915 1.2339 33 1 4.5199 -4.9219 -0.7515 34 1 4.2019 -5.1729 0.9982 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049568141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:39 Heat of formation + Delta-G solvation = -14.377396 kcal Electronic energy + Delta-G solvation = -14316.501939 eV Core-core repulsion = 12054.877042 eV Total energy + Delta-G solvation = -2261.624898 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.25826 -37.03627 -34.80325 -33.69936 -31.45713 -29.08666 -28.47670 -25.82854 -23.44842 -22.05964 -21.62467 -20.59690 -18.95597 -17.67337 -16.63475 -16.32795 -15.77224 -15.13934 -15.10811 -14.90257 -14.43382 -14.27828 -13.87436 -13.43458 -13.06684 -12.72486 -12.58353 -12.48997 -12.40329 -11.98805 -11.89569 -11.76305 -11.49399 -11.41576 -11.19637 -10.83689 -9.43947 -9.12271 -8.31905 -6.36301 1.32784 1.35298 1.46402 2.32286 3.00712 3.03046 3.44289 3.54353 3.86799 4.01628 4.10359 4.12565 4.22468 4.43963 4.48984 4.56559 4.68788 4.79367 4.87803 4.89899 4.99167 5.04400 5.11082 5.16162 5.20967 5.24395 5.41138 5.51293 5.85731 5.97988 6.07558 6.52995 6.63989 6.74643 7.28835 8.84808 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.054688 B = 0.007533 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.871980 B = 3716.205843 C = 4029.981516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.252 1.252 6 H -0.280 1.280 7 C -0.528 4.528 8 H 0.038 0.962 9 C 0.177 3.823 10 N -0.672 5.672 11 C 0.079 3.921 12 H 0.070 0.930 13 C -0.161 4.161 14 C 0.041 3.959 15 N -0.515 5.515 16 C 0.030 3.970 17 C -0.139 4.139 18 C -0.128 4.128 19 C 0.073 3.927 20 H 0.092 0.908 21 H 0.268 0.732 22 H -0.015 1.015 23 H 0.023 0.977 24 H 0.337 0.663 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.911 -8.869 -2.467 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.176 1.176 6 H -0.206 1.206 7 C -0.566 4.566 8 H 0.056 0.944 9 C 0.049 3.951 10 N -0.303 5.303 11 C -0.033 4.033 12 H 0.089 0.911 13 C -0.201 4.201 14 C -0.087 4.087 15 N -0.239 5.239 16 C -0.098 4.098 17 C -0.177 4.177 18 C -0.167 4.167 19 C -0.036 4.036 20 H 0.110 0.890 21 H 0.077 0.923 22 H 0.003 0.997 23 H 0.041 0.959 24 H 0.156 0.844 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.226 -8.643 -1.499 18.445 hybrid contribution -0.923 0.895 -1.293 1.824 sum 15.303 -7.748 -2.793 17.378 Atomic orbital electron populations 1.70050 1.08139 1.28233 1.52299 1.25865 0.95622 1.03249 0.94146 0.85672 0.79333 0.78488 0.79161 1.19106 1.17551 1.20581 1.21336 0.91386 0.93433 1.50446 0.94388 1.19746 0.93587 0.87231 0.94578 1.60435 1.05703 1.14391 1.49738 1.22215 0.88073 0.97855 0.95148 0.91150 1.23018 0.99138 1.00437 0.97505 1.22873 0.98679 0.96301 0.90878 1.65905 1.36376 1.07849 1.13732 1.23304 0.98278 0.87134 1.01081 1.22867 0.95066 0.97560 1.02217 1.22815 0.97896 0.94484 1.01500 1.23107 0.88202 0.93590 0.98656 0.88983 0.92331 0.99692 0.95944 0.84446 0.91902 0.90982 0.92210 0.89697 0.91174 0.89528 0.90047 0.90527 0.92381 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 2 C 0.01 0.52 5.47 84.65 0.46 0.98 16 3 Si 0.95 44.39 27.47 68.60 1.88 46.28 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.53 -30.79 9.87 25.60 0.25 -30.53 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 9 C 0.18 8.51 4.35 85.56 0.37 8.88 16 10 N -0.67 -27.23 5.45 -493.12 -2.69 -29.92 16 11 C 0.08 2.59 3.07 45.39 0.14 2.73 16 12 H 0.07 2.45 7.84 -2.38 -0.02 2.43 16 13 C -0.16 -4.54 6.44 31.07 0.20 -4.34 16 14 C 0.04 0.96 6.59 86.35 0.57 1.53 16 15 N -0.52 -12.87 5.87 -854.91 -5.02 -17.88 16 16 C 0.03 0.60 6.80 86.54 0.59 1.19 16 17 C -0.14 -2.84 6.93 31.80 0.22 -2.62 16 18 C -0.13 -3.45 5.36 31.95 0.17 -3.28 16 19 C 0.07 2.10 3.97 45.36 0.18 2.28 16 20 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 21 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 22 H -0.01 -0.68 7.57 -2.39 -0.02 -0.70 16 23 H 0.02 1.10 7.13 -2.39 -0.02 1.08 16 24 H 0.34 13.46 6.92 -89.69 -0.62 12.84 16 25 H 0.06 1.84 7.51 -2.38 -0.02 1.82 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.06 1.26 6.88 -2.38 -0.02 1.25 16 28 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.07 1.25 6.87 -2.38 -0.02 1.23 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.66 6.95 -2.39 -0.02 1.64 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -63.85 263.39 -1.97 -65.82 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.39 Total: 18.06 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 3.16 Total: -23.18 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -7.41 Total: -106.98 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.28 kcal Total: -63.85 -1.97 -65.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049568141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.440 kcal (2) G-P(sol) polarization free energy of solvation -63.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds