Wall clock time and date at job start Mon Mar 30 2020 02:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00023 * 2 1 4 4 H 1.48506 * 109.46955 * 239.99613 * 3 2 1 5 5 H 1.48498 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47239 * 120.00063 * 3 2 1 7 7 C 1.37877 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99508 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.46853 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00013 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.32875 * 32.91243 * 11 10 9 13 13 C 1.54567 * 110.28584 * 270.82803 * 11 10 9 14 14 C 1.54966 * 102.95057 * 219.44883 * 13 11 10 15 15 N 1.48354 * 103.13878 * 37.60460 * 14 13 11 16 16 C 1.46976 * 110.59780 * 203.70617 * 15 14 13 17 17 C 1.53666 * 107.86574 * 96.70809 * 16 15 14 18 18 C 1.53979 * 105.67516 * 0.21911 * 17 16 15 19 19 C 1.48461 * 105.72479 * 320.15557 * 15 14 13 20 20 H 1.08999 * 112.47378 * 149.02325 * 19 15 14 21 21 H 0.97007 * 119.99504 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47494 * 60.00172 * 9 7 2 23 23 H 1.08994 * 109.47756 * 299.99634 * 9 7 2 24 24 H 1.00897 * 111.00265 * 56.04245 * 10 9 7 25 25 H 1.08999 * 110.71712 * 337.81233 * 13 11 10 26 26 H 1.09001 * 110.71821 * 101.08201 * 13 11 10 27 27 H 1.08995 * 110.68450 * 155.97763 * 14 13 11 28 28 H 1.08999 * 110.68738 * 279.16394 * 14 13 11 29 29 H 1.09002 * 109.79270 * 337.10052 * 16 15 14 30 30 H 1.09000 * 109.79093 * 216.31459 * 16 15 14 31 31 H 1.09001 * 110.20411 * 119.26364 * 17 16 15 32 32 H 1.08990 * 110.20920 * 241.16313 * 17 16 15 33 33 H 1.08998 * 110.39750 * 135.90599 * 18 17 16 34 34 H 1.08999 * 110.39249 * 258.18009 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 1.5052 -4.9070 0.0012 12 1 0.5709 -4.8309 -0.5553 13 6 1.2296 -5.3679 1.4506 14 6 1.4952 -6.8933 1.3864 15 7 2.6536 -6.9954 0.4652 16 6 2.7039 -8.3262 -0.1567 17 6 2.0331 -8.2277 -1.5357 18 6 1.5946 -6.7589 -1.6811 19 6 2.4027 -6.0014 -0.6085 20 1 3.3246 -5.5863 -1.0158 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.8398 -3.5483 0.7835 25 1 1.9169 -4.8857 2.1458 26 1 0.1948 -5.1680 1.7287 27 1 1.7526 -7.2810 2.3720 28 1 0.6311 -7.4178 0.9787 29 1 2.1679 -9.0442 0.4640 30 1 3.7412 -8.6405 -0.2724 31 1 2.7444 -8.4877 -2.3197 32 1 1.1655 -8.8859 -1.5802 33 1 1.8400 -6.3858 -2.6754 34 1 0.5255 -6.6613 -1.4930 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049568143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:42 Heat of formation + Delta-G solvation = -21.598890 kcal Electronic energy + Delta-G solvation = -14145.224883 eV Core-core repulsion = 11883.286838 eV Total energy + Delta-G solvation = -2261.938045 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.16249 -37.04639 -34.86207 -33.45538 -31.35105 -29.02587 -28.40593 -25.59758 -23.60844 -22.19136 -21.59490 -20.85978 -18.58878 -17.20781 -16.98747 -16.45863 -15.58850 -15.39997 -14.87060 -14.52708 -14.44369 -14.29259 -13.60166 -13.41734 -12.95204 -12.80051 -12.59431 -12.50188 -12.30650 -12.14178 -12.03111 -11.73832 -11.70087 -11.34089 -11.14794 -10.66263 -9.44705 -9.06848 -8.22935 -6.34351 1.41086 1.44846 1.52883 2.40061 3.09823 3.10298 3.47252 3.58177 3.74410 3.97465 4.08105 4.18782 4.28905 4.46931 4.50329 4.56015 4.64579 4.86385 4.92068 4.96315 4.98582 5.07534 5.11613 5.15065 5.21666 5.28801 5.38242 5.62716 5.90875 6.02490 6.12386 6.46686 6.72343 6.88688 7.36752 8.88395 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.063150 B = 0.006368 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.282059 B = 4395.884275 C = 4478.662405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.213 3.787 10 N -0.680 5.680 11 C 0.078 3.922 12 H 0.062 0.938 13 C -0.151 4.151 14 C 0.043 3.957 15 N -0.517 5.517 16 C 0.033 3.967 17 C -0.139 4.139 18 C -0.145 4.145 19 C 0.073 3.927 20 H 0.091 0.909 21 H 0.265 0.735 22 H -0.003 1.003 23 H -0.038 1.038 24 H 0.335 0.665 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.127 -15.841 0.099 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.085 3.915 10 N -0.310 5.310 11 C -0.033 4.033 12 H 0.080 0.920 13 C -0.190 4.190 14 C -0.085 4.085 15 N -0.239 5.239 16 C -0.096 4.096 17 C -0.177 4.177 18 C -0.185 4.185 19 C -0.036 4.036 20 H 0.109 0.891 21 H 0.074 0.926 22 H 0.015 0.985 23 H -0.021 1.021 24 H 0.153 0.847 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.590 -15.625 -0.280 16.034 hybrid contribution -1.145 0.941 0.412 1.538 sum 2.445 -14.683 0.132 14.886 Atomic orbital electron populations 1.70087 1.07815 1.28079 1.51462 1.25959 0.95798 1.03401 0.94497 0.85372 0.78106 0.77563 0.79170 1.19340 1.20685 1.19089 1.21536 0.93810 0.91544 1.50767 0.91844 1.19169 0.90553 0.88805 0.92970 1.60596 1.19978 1.01141 1.49273 1.22630 0.95671 0.89818 0.95229 0.92020 1.23217 1.01323 0.97129 0.97377 1.23202 0.92431 0.94714 0.98148 1.65903 1.39274 1.04383 1.14385 1.22862 1.01869 0.90678 0.94152 1.22549 1.01322 0.95422 0.98452 1.22828 0.99719 0.96045 0.99870 1.23138 0.97842 0.91664 0.90923 0.89111 0.92594 0.98529 1.02073 0.84683 0.91594 0.91750 0.88859 0.92717 0.90227 0.89838 0.90154 0.90243 0.90913 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.54 -31.43 9.32 25.60 0.24 -31.19 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.70 5.29 85.55 0.45 12.15 16 10 N -0.68 -30.49 6.24 -490.88 -3.06 -33.55 16 11 C 0.08 2.87 2.85 45.82 0.13 3.00 16 12 H 0.06 2.44 6.94 -2.38 -0.02 2.42 16 13 C -0.15 -4.85 6.71 31.80 0.21 -4.64 16 14 C 0.04 1.10 6.12 86.69 0.53 1.63 16 15 N -0.52 -13.94 5.79 -853.02 -4.94 -18.88 16 16 C 0.03 0.67 6.64 86.51 0.57 1.24 16 17 C -0.14 -2.69 6.91 31.15 0.22 -2.48 16 18 C -0.15 -3.74 6.16 31.32 0.19 -3.55 16 19 C 0.07 2.26 3.93 45.39 0.18 2.44 16 20 H 0.09 3.11 8.01 -2.39 -0.02 3.09 16 21 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 22 H 0.00 -0.20 8.07 -2.39 -0.02 -0.22 16 23 H -0.04 -2.25 8.14 -2.39 -0.02 -2.27 16 24 H 0.34 14.64 8.09 -89.70 -0.73 13.92 16 25 H 0.07 2.23 7.56 -2.39 -0.02 2.21 16 26 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 1.27 7.94 -2.39 -0.02 1.25 16 29 H 0.08 1.37 7.68 -2.39 -0.02 1.35 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.61 7.39 -2.39 -0.02 1.59 16 Total: -1.00 -63.73 270.38 -2.16 -65.90 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.34 Total: 17.39 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 3.19 Total: -20.83 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -7.72 Total: -109.35 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.73 -2.16 -65.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049568143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.298 kcal (2) G-P(sol) polarization free energy of solvation -63.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds