Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.64363 * 328.16505 * 11 10 9 13 13 C 1.55159 * 110.73213 * 91.53108 * 11 10 9 14 14 C 1.54838 * 101.65560 * 154.51189 * 13 11 10 15 15 N 1.47955 * 105.06370 * 323.32415 * 14 13 11 16 16 C 1.47963 * 109.39937 * 140.78939 * 15 14 13 17 17 C 1.54836 * 105.06192 * 219.20444 * 16 15 14 18 18 C 1.55167 * 101.66178 * 36.67268 * 17 16 15 19 19 C 1.47857 * 108.37440 * 22.81259 * 15 14 13 20 20 H 1.09002 * 111.37759 * 239.31723 * 19 15 14 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.00894 * 111.00555 * 56.04687 * 10 9 7 25 25 H 1.09003 * 110.98859 * 272.60065 * 13 11 10 26 26 H 1.08997 * 110.98760 * 36.41590 * 13 11 10 27 27 H 1.08998 * 110.32301 * 204.43028 * 14 13 11 28 28 H 1.08997 * 110.41256 * 82.26883 * 14 13 11 29 29 H 1.08994 * 110.32258 * 100.31148 * 16 15 14 30 30 H 1.08992 * 110.40881 * 338.14875 * 16 15 14 31 31 H 1.08998 * 110.99479 * 278.57730 * 17 16 15 32 32 H 1.09002 * 111.01964 * 154.77944 * 17 16 15 33 33 H 1.09000 * 110.73154 * 205.49572 * 18 17 16 34 34 H 1.09002 * 110.72704 * 82.19509 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 1.5051 -4.9071 -0.0167 12 1 0.5599 -4.8343 0.5213 13 6 1.2780 -5.4015 -1.4697 14 6 1.1837 -6.9338 -1.2677 15 7 2.1608 -7.2417 -0.2003 16 6 1.5975 -8.2727 0.6992 17 6 2.0340 -7.8470 2.1225 18 6 1.9364 -6.3010 2.0312 19 6 2.3932 -6.0124 0.5877 20 1 3.4429 -5.7192 0.5663 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.8403 -3.5522 0.7714 25 1 0.3484 -5.0035 -1.8768 26 1 2.1237 -5.1430 -2.1068 27 1 1.4512 -7.4541 -2.1873 28 1 0.1785 -7.2146 -0.9533 29 1 2.0071 -9.2528 0.4550 30 1 0.5102 -8.2884 0.6255 31 1 3.0571 -8.1621 2.3278 32 1 1.3489 -8.2377 2.8748 33 1 2.6065 -5.8290 2.7497 34 1 0.9093 -5.9697 2.1844 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049568145.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = 0.655841 kcal Electronic energy + Delta-G solvation = -14145.801624 eV Core-core repulsion = 11884.828617 eV Total energy + Delta-G solvation = -2260.973008 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.86442 -35.23619 -33.23047 -32.24613 -29.78438 -27.74534 -26.40908 -24.06734 -21.83057 -21.27788 -19.97867 -19.61078 -16.52714 -16.07207 -15.60450 -14.60031 -14.43310 -14.02697 -13.54482 -13.29113 -12.67859 -12.55564 -12.15227 -11.80322 -11.50281 -11.28304 -11.21463 -11.00790 -10.83294 -10.63799 -10.60400 -10.29125 -10.25034 -9.81537 -9.16013 -8.49335 -8.28262 -7.30952 -6.03918 -4.05748 3.30892 3.38114 3.43539 4.14167 4.42849 4.64955 4.67962 4.95825 5.18935 5.23899 5.31027 5.32443 5.50369 5.54605 5.58135 5.75149 5.84496 5.91861 5.98142 6.04057 6.11642 6.23397 6.39360 6.48221 6.66384 7.07034 7.11802 7.27467 7.40270 7.79464 8.12796 8.39176 8.60934 9.04105 9.59368 11.07315 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057978 B = 0.006573 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.823786 B = 4258.833142 C = 4448.457671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.678 5.678 11 C 0.070 3.930 12 H 0.044 0.956 13 C -0.118 4.118 14 C 0.033 3.967 15 N -0.508 5.508 16 C 0.032 3.968 17 C -0.130 4.130 18 C -0.142 4.142 19 C 0.059 3.941 20 H 0.098 0.902 21 H 0.261 0.739 22 H -0.015 1.015 23 H 0.027 0.973 24 H 0.329 0.671 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 -14.234 2.231 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.308 5.308 11 C -0.041 4.041 12 H 0.061 0.939 13 C -0.157 4.157 14 C -0.095 4.095 15 N -0.232 5.232 16 C -0.097 4.097 17 C -0.169 4.169 18 C -0.181 4.181 19 C -0.049 4.049 20 H 0.116 0.884 21 H 0.070 0.930 22 H 0.003 0.997 23 H 0.046 0.954 24 H 0.147 0.853 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.400 -14.294 1.298 14.552 hybrid contribution -0.854 1.229 1.253 1.952 sum 1.546 -13.065 2.550 13.401 Atomic orbital electron populations 1.69978 1.06114 1.26673 1.51065 1.25000 0.94877 0.99417 0.95342 0.86422 0.80089 0.83292 0.77495 1.19616 1.20981 1.21111 1.21239 0.93584 0.90229 1.50131 0.91863 1.19589 0.90562 0.87403 0.95631 1.60717 1.20832 1.00632 1.48655 1.22841 0.95319 0.90733 0.95255 0.93867 1.22764 1.02535 0.92679 0.97743 1.23280 0.93597 0.96960 0.95706 1.65447 1.40173 1.07224 1.10320 1.23286 0.97708 0.96653 0.92014 1.22740 1.01808 0.95733 0.96575 1.22978 1.01883 0.95841 0.97382 1.23192 1.00839 0.89736 0.91163 0.88391 0.92981 0.99745 0.95445 0.85328 0.91400 0.89862 0.90520 0.93706 0.90545 0.93450 0.90841 0.91201 0.90730 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.68 9.32 -34.44 -0.32 -15.00 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.16 5.30 -4.98 -0.03 5.14 16 10 N -0.68 -14.71 6.34 -106.16 -0.67 -15.38 16 11 C 0.07 1.29 2.81 -65.97 -0.19 1.10 16 12 H 0.04 0.85 6.98 -51.93 -0.36 0.48 16 13 C -0.12 -2.01 6.76 -24.62 -0.17 -2.17 16 14 C 0.03 0.46 6.72 -2.27 -0.02 0.45 16 15 N -0.51 -7.35 5.75 -220.30 -1.27 -8.62 16 16 C 0.03 0.38 6.72 -2.27 -0.02 0.36 16 17 C -0.13 -1.46 7.07 -24.62 -0.17 -1.63 16 18 C -0.14 -1.91 6.47 -24.99 -0.16 -2.07 16 19 C 0.06 0.92 3.55 -66.00 -0.23 0.68 16 20 H 0.10 1.59 7.92 -51.93 -0.41 1.17 16 21 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 22 H -0.02 -0.43 8.08 -51.93 -0.42 -0.85 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.33 6.82 8.31 -39.29 -0.33 6.49 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.60 7.08 -51.93 -0.37 0.23 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.55 7.08 -51.93 -0.37 0.18 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.97 7.30 -51.93 -0.38 0.59 16 LS Contribution 270.43 15.07 4.08 4.08 Total: -1.00 -29.92 270.43 -9.11 -39.03 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.56 Total: 2.09 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -1.40 Total: -11.66 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -1.20 Total: -50.34 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.92 -9.11 -39.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049568145.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.683 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds