Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.64363 * 328.16505 * 11 10 9 13 13 C 1.55159 * 110.73213 * 91.53108 * 11 10 9 14 14 C 1.54838 * 101.65560 * 154.51189 * 13 11 10 15 15 N 1.47955 * 105.06370 * 323.32415 * 14 13 11 16 16 C 1.47963 * 109.39937 * 140.78939 * 15 14 13 17 17 C 1.54836 * 105.06192 * 219.20444 * 16 15 14 18 18 C 1.55167 * 101.66178 * 36.67268 * 17 16 15 19 19 C 1.47857 * 108.37440 * 22.81259 * 15 14 13 20 20 H 1.09002 * 111.37759 * 239.31723 * 19 15 14 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.00894 * 111.00555 * 56.04687 * 10 9 7 25 25 H 1.09003 * 110.98859 * 272.60065 * 13 11 10 26 26 H 1.08997 * 110.98760 * 36.41590 * 13 11 10 27 27 H 1.08998 * 110.32301 * 204.43028 * 14 13 11 28 28 H 1.08997 * 110.41256 * 82.26883 * 14 13 11 29 29 H 1.08994 * 110.32258 * 100.31148 * 16 15 14 30 30 H 1.08992 * 110.40881 * 338.14875 * 16 15 14 31 31 H 1.08998 * 110.99479 * 278.57730 * 17 16 15 32 32 H 1.09002 * 111.01964 * 154.77944 * 17 16 15 33 33 H 1.09000 * 110.73154 * 205.49572 * 18 17 16 34 34 H 1.09002 * 110.72704 * 82.19509 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 1.5051 -4.9071 -0.0167 12 1 0.5599 -4.8343 0.5213 13 6 1.2780 -5.4015 -1.4697 14 6 1.1837 -6.9338 -1.2677 15 7 2.1608 -7.2417 -0.2003 16 6 1.5975 -8.2727 0.6992 17 6 2.0340 -7.8470 2.1225 18 6 1.9364 -6.3010 2.0312 19 6 2.3932 -6.0124 0.5877 20 1 3.4429 -5.7192 0.5663 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.8403 -3.5522 0.7714 25 1 0.3484 -5.0035 -1.8768 26 1 2.1237 -5.1430 -2.1068 27 1 1.4512 -7.4541 -2.1873 28 1 0.1785 -7.2146 -0.9533 29 1 2.0071 -9.2528 0.4550 30 1 0.5102 -8.2884 0.6255 31 1 3.0571 -8.1621 2.3278 32 1 1.3489 -8.2377 2.8748 33 1 2.6065 -5.8290 2.7497 34 1 0.9093 -5.9697 2.1844 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049568145.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = -21.296005 kcal Electronic energy + Delta-G solvation = -14146.753528 eV Core-core repulsion = 11884.828617 eV Total energy + Delta-G solvation = -2261.924911 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.07749 -36.91872 -34.87779 -33.91532 -31.28574 -28.90750 -28.29740 -25.52108 -23.76384 -22.38937 -21.31807 -20.89360 -18.59175 -17.35218 -16.92780 -16.56278 -15.97980 -15.24060 -15.07334 -14.64731 -14.22492 -14.04254 -13.79932 -13.34854 -13.12299 -12.76027 -12.53271 -12.50109 -12.30492 -12.14053 -12.01174 -11.79776 -11.62384 -11.36093 -11.24852 -10.69281 -9.42355 -9.16952 -8.25172 -6.36722 1.40227 1.41119 1.55324 2.38597 3.01361 3.08340 3.43512 3.50878 3.65120 3.96143 4.08496 4.18805 4.25264 4.34436 4.48669 4.53724 4.71065 4.88046 4.89433 4.93458 4.97903 5.02203 5.06959 5.17363 5.21797 5.26158 5.31868 5.61558 5.89177 6.00170 6.03935 6.41878 6.69133 6.85948 7.34650 8.86836 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057978 B = 0.006573 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.823786 B = 4258.833142 C = 4448.457671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.213 3.787 10 N -0.675 5.675 11 C 0.065 3.935 12 H 0.028 0.972 13 C -0.120 4.120 14 C 0.042 3.958 15 N -0.515 5.515 16 C 0.028 3.972 17 C -0.121 4.121 18 C -0.144 4.144 19 C 0.066 3.934 20 H 0.091 0.909 21 H 0.265 0.735 22 H -0.042 1.042 23 H -0.003 1.003 24 H 0.335 0.665 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -15.113 2.663 15.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.085 3.915 10 N -0.306 5.306 11 C -0.046 4.046 12 H 0.045 0.955 13 C -0.159 4.159 14 C -0.086 4.086 15 N -0.239 5.239 16 C -0.100 4.100 17 C -0.158 4.158 18 C -0.182 4.182 19 C -0.043 4.043 20 H 0.109 0.891 21 H 0.074 0.926 22 H -0.024 1.024 23 H 0.016 0.984 24 H 0.153 0.847 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.423 -15.205 1.732 15.682 hybrid contribution -1.202 1.456 1.103 2.186 sum 2.221 -13.749 2.835 14.213 Atomic orbital electron populations 1.70104 1.07886 1.28003 1.51558 1.25987 0.95803 1.03513 0.94475 0.85242 0.78922 0.78072 0.77797 1.18590 1.20352 1.20179 1.21583 0.93852 0.91379 1.50594 0.91667 1.19193 0.90506 0.88914 0.92868 1.60603 1.20094 1.00958 1.48953 1.22943 0.95082 0.90063 0.96550 0.95450 1.22736 1.01481 0.95209 0.96471 1.23249 0.94331 0.94445 0.96595 1.65496 1.40706 1.06991 1.10749 1.23420 0.98090 0.96554 0.91896 1.22731 1.02989 0.93437 0.96687 1.22962 1.01184 0.98063 0.96014 1.23060 0.99602 0.89125 0.92490 0.89086 0.92578 1.02448 0.98445 0.84682 0.92427 0.91043 0.88787 0.92622 0.88671 0.93003 0.89844 0.89222 0.90129 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.31 13.29 21.45 0.28 -57.03 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.98 44.75 29.54 68.60 2.03 46.77 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.54 -31.18 9.32 25.60 0.24 -30.94 16 8 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 9 C 0.21 11.75 5.30 85.56 0.45 12.21 16 10 N -0.68 -30.15 6.34 -489.77 -3.11 -33.25 16 11 C 0.07 2.43 2.81 46.04 0.13 2.56 16 12 H 0.03 1.12 6.98 -2.39 -0.02 1.10 16 13 C -0.12 -4.13 6.76 31.96 0.22 -3.91 16 14 C 0.04 1.13 6.72 86.73 0.58 1.71 16 15 N -0.52 -13.94 5.75 -850.90 -4.90 -18.83 16 16 C 0.03 0.59 6.72 86.73 0.58 1.17 16 17 C -0.12 -2.34 7.07 31.96 0.23 -2.12 16 18 C -0.14 -3.67 6.47 31.72 0.21 -3.46 16 19 C 0.07 1.99 3.55 45.50 0.16 2.15 16 20 H 0.09 2.88 7.92 -2.39 -0.02 2.86 16 21 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 22 H -0.04 -2.50 8.08 -2.38 -0.02 -2.52 16 23 H 0.00 -0.16 8.14 -2.39 -0.02 -0.17 16 24 H 0.34 14.14 8.31 -89.70 -0.75 13.40 16 25 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.06 1.38 7.08 -2.39 -0.02 1.37 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 1.06 7.08 -2.39 -0.02 1.04 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.58 7.30 -2.39 -0.02 1.56 16 Total: -1.00 -64.45 270.43 -2.11 -66.57 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.32 Total: 15.93 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 3.26 Total: -20.15 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -7.72 Total: -109.11 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.45 -2.11 -66.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049568145.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.269 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds